Gene Haur_4681 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHaur_4681 
Symbol 
ID5736528 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameHerpetosiphon aurantiacus ATCC 23779 
KingdomBacteria 
Replicon accessionNC_009972 
Strand- 
Start bp5978106 
End bp5979182 
Gene Length1077 bp 
Protein Length358 aa 
Translation table11 
GC content51% 
IMG OID641281845 
Productsolute-binding protein 
Protein accessionYP_001547440 
Protein GI159901193 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG4213] ABC-type xylose transport system, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones34 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCGACGCA GGTTTGTGCT ATTGGTACTT TTGCTGGTGC TAGTTGGATG TGGTGGAGCG 
GAAGCGCCCA AGGCCAAAAT TATTGCGCTG TTGTTGCCAG AGCAAACCAC CAAACGCTAT 
GAAACTGTGG ATCGGCCATG GTTCGAGCGC GAAATGAATT TGCTCTGCAA CGATTGTCAG 
GTGTTGTACT ACAACGCCCA AAATAACCCA AGCTTGCAAC AACAGCAGGC CGAAGAGGCG 
ATCAAGGCTG GGGCACGGGT GTTGGTGCTT GATCCAGTCG ATTCGGTCGA TGCTCGCACG 
ATTGCTGATC ATGCTGCTGA GCAATCGATT CCAGTTGTGG CCTATGATCG GCTGATTCTT 
AATTCGCCTG GCGTTACGGC CTATATCTCG TTTGATAACC AAAAAATCGG CGAATTACAG 
GCCGAAAGCT TGATTGCCGG CCTTGCCGCG CGTGGCCTGA GTAATCCCAA AATTCTGCTG 
CTTCACGGCT CGCTGAGCGA TAACAATGCC AGCGAGTACA AGCGTGGAGC CAAAAAGGTT 
TTTGATCCAT TAGTCGCTGC TGGCAAATTG ACGATTATTG GCGAGTTTGA TACGCCCGAT 
TGGAAGCCCG CCGAGGCGCA GCAATATGTT GAACGAATGC TGGCAGCTGG CGATCAGATC 
GACGGAATTT ATGCGGCCAA TGATGGTACT GCTGGTGGTG CATTAGTCGC TGTCCAAGCA 
GCCAAGCTTG AGCCATTGCC CTTGATTACT GGCCAAGATG CTGAACTCAC CGCCGTGCAG 
CGGATCATCA CTGGTGAGCA ACATATGACG GTGTATAAGG CAATTCGGCC TCAAGCCGAG 
GCTGCCGCCA AAATCGCTCA TGCCTTGATG GTTGGTCAGC CCATTCCAAC CAACTTGGTC 
AACAATCGCA CGGTGGCAAA CGGAATTATG AATGTTCCAG CGATTTTGCT CAATCCAGTT 
GTGGTCACCA AAGCCACGGT CAAAGATACC ATTGTGAGCG ATAATTTTTG GTCGCCGCAA 
CAACTTTGCC CAGTCAAATT AGTACCCGCT TGTGAAGCAG TAGGCATCAA GCCCTAA
 
Protein sequence
MRRRFVLLVL LLVLVGCGGA EAPKAKIIAL LLPEQTTKRY ETVDRPWFER EMNLLCNDCQ 
VLYYNAQNNP SLQQQQAEEA IKAGARVLVL DPVDSVDART IADHAAEQSI PVVAYDRLIL 
NSPGVTAYIS FDNQKIGELQ AESLIAGLAA RGLSNPKILL LHGSLSDNNA SEYKRGAKKV 
FDPLVAAGKL TIIGEFDTPD WKPAEAQQYV ERMLAAGDQI DGIYAANDGT AGGALVAVQA 
AKLEPLPLIT GQDAELTAVQ RIITGEQHMT VYKAIRPQAE AAAKIAHALM VGQPIPTNLV 
NNRTVANGIM NVPAILLNPV VVTKATVKDT IVSDNFWSPQ QLCPVKLVPA CEAVGIKP