| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Haur_4672 |
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| Symbol | |
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| ID | 5736519 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Herpetosiphon aurantiacus ATCC 23779 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009972 |
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| Strand | - |
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| Start bp | 5967897 |
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| End bp | 5969024 |
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| Gene Length | 1128 bp |
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| Protein Length | 375 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 641281836 |
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| Product | RpoD family RNA polymerase sigma factor |
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| Protein accession | YP_001547431 |
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| Protein GI | 159901184 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGGGGCAG CCCGTCAGCA TCGTTATCTA ACGCACGACC AAGTGCTGCT CCACCTTCCT
CCCTCCGACA AAAACACAGC GCTGTTCGAC GAATTGTGTG TCCGCTGCCA AGCAGAAGAT
ATTCCAATTT TGGAAGAACC GCCAACCGCT GCAGTGCATC TCCGTTCACG CGATGTCGAT
GATGACGATC TCGAACGGTC TCTGATTCGG GAAGGGGTAA GCCTCGATGA TCCGGTGCGC
ATGTATTTGC GCGAAATTGG CCAAGTGCAT CTCTTAACCG CCCACGAAGA AACCATGTTG
GCCAAACAAT TGGAACGCGG CGAACGCGCA ATGATTCGGC TCGCCCGCCA CGAATATCTC
CTCGAAGAAA AAGCCCGCCT GCAACAGCAA GTTCTCGAAA GCGAAGCAGC CCGTCAACAT
CTCATCCAAG CCAATTTACG CCTCGTGGTG TCGATTGCAA AAAAATATGT TGGCCGCGGC
ATGTCGTTTT TAGATTTAAT TCAAGAGGGC AATATTGGCC TGATGCGGGC AACCGAGAAG
TTCGATTATC ACAAGGGCTT TAAGTTCTCA ACCTATGCAA CATGGTGGAT TCGCCAAGCA
ATTACGCGCT CGATCTCTGA TCATAGTCGC ACTATTCGCC TGCCAGTTCA CGTGGGCGAG
ACGATCAATC GGGTCAAGCG CACGGCCCAC AAGTTGCAAC AAGCCTTAGA GCGTGAGCCA
AGTGCCGAGG AGATTGGCGA AGCCCTTGGG TTGCCCGCCG ATAAAGTGCG GCGCGTGCTC
GAAGTTGCCC GTCAGCCAGT TTCGCTGGAA ACGCCCGTTG GCAACGAAGG CGATAGTGTG
TTAGGCGATT TTATCGAAGA TGATCGCTCA TCCGAGCCAC TTGATCATGC GACCGAGCAT
TTATTGCGCG AACAACTTGA TGAAGTGCTG TGCAAGCTCG ATGAGCGTGA ACGGCGGATT
ATTGAGCTAC GCTATGGCTT GGTCGATGGC AAATATCGTA CCCTTGAAGA AGTTGGCCGC
GAATTTGGCA TTACCCGCGA GCGAATTCGC CAAATTGAGG CCAAAGTACT GCGAAAACTG
CGCCACCCAG CGTTTGGTGG GCGCAAATTG CGAGCCTATC TTGAATAA
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| Protein sequence | MGAARQHRYL THDQVLLHLP PSDKNTALFD ELCVRCQAED IPILEEPPTA AVHLRSRDVD
DDDLERSLIR EGVSLDDPVR MYLREIGQVH LLTAHEETML AKQLERGERA MIRLARHEYL
LEEKARLQQQ VLESEAARQH LIQANLRLVV SIAKKYVGRG MSFLDLIQEG NIGLMRATEK
FDYHKGFKFS TYATWWIRQA ITRSISDHSR TIRLPVHVGE TINRVKRTAH KLQQALEREP
SAEEIGEALG LPADKVRRVL EVARQPVSLE TPVGNEGDSV LGDFIEDDRS SEPLDHATEH
LLREQLDEVL CKLDERERRI IELRYGLVDG KYRTLEEVGR EFGITRERIR QIEAKVLRKL
RHPAFGGRKL RAYLE
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