| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Haur_4650 |
|---|
| Symbol | |
|---|
| ID | 5736497 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Herpetosiphon aurantiacus ATCC 23779 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009972 |
|---|
| Strand | + |
|---|
| Start bp | 5941264 |
|---|
| End bp | 5941839 |
|---|
| Gene Length | 576 bp |
|---|
| Protein Length | 191 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 641281814 |
|---|
| Product | ECF subfamily RNA polymerase sigma-24 factor |
|---|
| Protein accession | YP_001547409 |
|---|
| Protein GI | 159901162 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
|---|
| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCTGGTG ATCCGCCAGG TGATAATGTG TTAATTCGGC GGATTGCCCA GGGCGATGAG
CAGGCGCTAT CGCAACTTTA CGATCGGTAT GCTGCAACAG TGATGGGGAT TGCCTTGAAA
ATCGTGCGTC AACGCGAGAT TGCCGAGGAA ATTACCCAAG AGGCTTTTTG GCGAGTATGG
CAACGGGCAA GCACATTTGA TAATAGCCGT GGTAATTGTG CCCCTTGGCT TTTTGGCATT
GCTCGCAACT TGAGCATCGA CGAACTGCGC CGTCGTGCGG CTCGCCCTCA AGCTGCCTAT
GAAGACCCTG AAAGACCATT GCTTGAGGCG ATTGCCGATG AAGCCAATGT GGAAGAAGTT
GTCTGGTTGG GTGAACAACG CTCAGTTGTG CGCTCAGCAA TGCAGGCGCT TTCTGCCGAA
CAACGTGAAG CGTTGGAACT AGCCTATTTT AGTGGGCTGA CTCAACGTGA AATTGCCGAT
AAATTAGGCA ATCCCTTGGG CACGATCAAA ACGCGTGTGC GGCTTGGTCT CTTGAAACTG
CGTGATCTTT TGGGTACACA ACAGTGGAAC GAATGA
|
|---|
| Protein sequence | MPGDPPGDNV LIRRIAQGDE QALSQLYDRY AATVMGIALK IVRQREIAEE ITQEAFWRVW
QRASTFDNSR GNCAPWLFGI ARNLSIDELR RRAARPQAAY EDPERPLLEA IADEANVEEV
VWLGEQRSVV RSAMQALSAE QREALELAYF SGLTQREIAD KLGNPLGTIK TRVRLGLLKL
RDLLGTQQWN E
|
|---|
| |