| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Haur_4642 |
|---|
| Symbol | |
|---|
| ID | 5736489 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Herpetosiphon aurantiacus ATCC 23779 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009972 |
|---|
| Strand | - |
|---|
| Start bp | 5931478 |
|---|
| End bp | 5932386 |
|---|
| Gene Length | 909 bp |
|---|
| Protein Length | 302 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 641281806 |
|---|
| Product | sortase family protein |
|---|
| Protein accession | YP_001547401 |
|---|
| Protein GI | 159901154 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3764] Sortase (surface protein transpeptidase) |
|---|
| TIGRFAM ID | [TIGR01076] LPXTG-site transpeptidase (sortase) family protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.068472 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGAAGCATA TAGAGTACGA GTTTGTAGTG GTACAACCGC CAACCATCGA TTCGACACAC
GACGATTTGG GCTTGCTTCA AGAATTGCTG GCAGCACCAC CACCAGTGCG TTCGTCATTG
CATCGGCCAG CCCAACTCCG TTCGCTCAAA GAAGAGCGGA AAACTGCACT TCAGGGTTAT
CGTTTCCGTG GGGTGCTTGA CGCTATTTTA GTGCGCTCGG AACGTTTGTT GATTGTTGGG
GTAATCATCT TTTTTGGTTA TTGGGTGGTC AACATCTACG GACGCGATTG GTGGTATGCT
CGTAACAATC CGGCGGCTCC AGCAGTGGCT TGGGAAGCAC TCGCACCAGG AGCTAGTGCC
GCTGAACTTG ATCGAGTGCT AGGCCAACAA TTACCAGTGA TTGCACCCGC CATCAGCGCG
GCTGCACCCG ATTATCTTGT GCCTGCTCAG GCGTTTATCT TGCCACCTGC ATCGCCAACC
CCAACGCCTG ATCCCATGAG CTTTGTTCCC AAACGGATGA TCGTGCCAAC AATGGAGCTT
GATAGTCCGG TGCGTGAAGT TTTTCTGCGC GATGGCATTT GGGAAGTTGC CGATTATGCT
GTGGGTTATC ATCATGGCAC GGCCTTACCA GGCAAAGGGA ATAGCGTTTT TGCGGGGCAT
GCAGGGATTC GCGGTAGTGT TTTCGCCCGC CTGAATGAAC TTCAGATTGG TCAAGATATC
TACGTCGAAA CTGCCGATAC CCGTTATCAT TATCAAGTCC AGACAATTCA ACAAGTTTGG
CCAAACCAAG TCGAAGTTAT GTATCCAACC GAGCAAGCAA TTATCACCAT GATCACATGT
ACCGCTTGGG ACACCCAGCG GTTGGTAGTT AAGGCTCGGC TGATTGATCA GGCAGCGCTC
TCCTCTTAA
|
|---|
| Protein sequence | MKHIEYEFVV VQPPTIDSTH DDLGLLQELL AAPPPVRSSL HRPAQLRSLK EERKTALQGY
RFRGVLDAIL VRSERLLIVG VIIFFGYWVV NIYGRDWWYA RNNPAAPAVA WEALAPGASA
AELDRVLGQQ LPVIAPAISA AAPDYLVPAQ AFILPPASPT PTPDPMSFVP KRMIVPTMEL
DSPVREVFLR DGIWEVADYA VGYHHGTALP GKGNSVFAGH AGIRGSVFAR LNELQIGQDI
YVETADTRYH YQVQTIQQVW PNQVEVMYPT EQAIITMITC TAWDTQRLVV KARLIDQAAL
SS
|
|---|
| |