| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Haur_4619 |
|---|
| Symbol | |
|---|
| ID | 5736466 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Herpetosiphon aurantiacus ATCC 23779 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009972 |
|---|
| Strand | - |
|---|
| Start bp | 5905584 |
|---|
| End bp | 5906108 |
|---|
| Gene Length | 525 bp |
|---|
| Protein Length | 174 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 641281783 |
|---|
| Product | 16S rRNA processing protein RimM |
|---|
| Protein accession | YP_001547378 |
|---|
| Protein GI | 159901131 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0806] RimM protein, required for 16S rRNA processing |
|---|
| TIGRFAM ID | [TIGR02273] 16S rRNA processing protein RimM |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.0000298653 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGACAGCTC CAAATCAAGA TGATTTCTTG TTAGTTGGCC GCATTTCAGC GGCGTTTGGC
GTGCGCGGCG AGTTGAAGAT TTCAATGATC TCATCGCACC CCGAACATAT TCAAAAACTT
AAACAATTGT TTGTGGGCGA TCTTTCCAAG CCTTATACGA TTGGCCGCCT GCACCAACAC
AAAGGCAGCC TGTATTTGTT GCGGCTGAAT GAGGTTGATA CCCGCGACGC TGCCGAAGCG
ATGCAAGGCC TTGAAGCCTA TATTCATCGC AGCGATGCAG CGCCCTTGGC CAATGATGAA
TATTTCTTGC ACGATTTGGT TGGCTTGCAA GTGCAAACTG AGGCCGGCGA AGACATTGGG
CGAGCAGTTG AAATTATTGA AACTGGCGCA AATGATGTAT TAGTCGTTCG CAAATTAGGC
CAAGCCGATA TTTTAGTGCC GATGGTGCGC ACGGTCGTTC GCTCAATTGA TATTGCTGGC
GGCACGATCA CCGTAACCTC GCTAGCCGAT ATTGTGCCTG AGTAA
|
|---|
| Protein sequence | MTAPNQDDFL LVGRISAAFG VRGELKISMI SSHPEHIQKL KQLFVGDLSK PYTIGRLHQH
KGSLYLLRLN EVDTRDAAEA MQGLEAYIHR SDAAPLANDE YFLHDLVGLQ VQTEAGEDIG
RAVEIIETGA NDVLVVRKLG QADILVPMVR TVVRSIDIAG GTITVTSLAD IVPE
|
|---|
| |