| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Haur_4477 |
|---|
| Symbol | |
|---|
| ID | 5736328 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Herpetosiphon aurantiacus ATCC 23779 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009972 |
|---|
| Strand | + |
|---|
| Start bp | 5728801 |
|---|
| End bp | 5730546 |
|---|
| Gene Length | 1746 bp |
|---|
| Protein Length | 581 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 641281640 |
|---|
| Product | multi-sensor signal transduction histidine kinase |
|---|
| Protein accession | YP_001547237 |
|---|
| Protein GI | 159900990 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0642] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.00493244 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGACC AACCCGCAGC TTCAGATTCA GCCGCATCAA CCAATCTTCA GACAGCCCTC
AACGCTGAGG TGGCGTTTGG TCTTCGCCCA ACCGTAACAG GATTGGGTTT TTTATATTTG
TTATTTAGTA TTGCCCATGC GTTGGTTTTG CCCAGCCCAA TTAAACTACC AATGGTCATC
GTAGCGCTCA GTAGTGTCAT TTTTTTTGGA TTTTGGTGGT GGCGCTTGCA AAGCTGGCGG
CCAGCCCCCG AGCTGACCCA TCCGCTGGCC ACGCTCTTTA TTGTGGTTGG CGGCTTCAAT
AGCGTTTTGC ATATCTGGCT GAGCGGCGAG ATTCACCAAA GCACCAATAT TGCCTTTATT
TTAATTGGCA CTGGCTGTTT GTTGCTTTCT TGGAATTGGT TCATCGTAGC GAGTGGGGCT
ATTTTGCTGG CGTGGATTGC GGCGATCATT TCATTGCCAA CCTCACCGTT GACCATGCAT
TTTATTTTTA TGGTGGTTAG TGCCACGATT GCCGCTGCCA CAATTCAAGG CATTCGTTTG
CGCACGGTCA AGGGCTTGAT CAAATTGCGC TTGCAAGAAA GCACCTACAA ACAAGAGCTA
CAAGAGGCCT TAATCCAAAT CAAAATGAGT GAAGAGCGTT TTCGCGCCTT GGCCGAAGCA
ACCTCCGAAG GGGTGGTATT GCAAGATGAA GGCGTGGTGA TGGATGCCAA CGAACGCTTT
GGCGAGATGT TTGGCTATCA TCGTGATGAA ATTCTCGGCC ACTCGTTACG CGAATTTGTC
GAGCCACAAT CGCTGCAACG GGCAATGCAA AAATATAAAG ATGGTGCGCC CTACGAAGTT
ACCGCACTGC GCAAAGATGG CAGCACCTTT ATCGCCTTGG TGTTGGGCAC CAATTTGCCC
TATAGCAATC GGGTGGTGCG GGTTGCGGCG GTGCGCGATA TTACTGAGCA GCGCCATTTT
GAAAATTTAT TGCTGACTGC CAAAGATGAT GCTGAGGCCG CCAACCGCGC CAAAAGCACT
TTCCTTTCAA CTGTCAGCCA CGAATTACGC ACGCCACTGA ATGCGATTGT TGGCTATAGC
GAAATGATCT ACGAGGATTT GATCGATCGC AGCATGCCTG AGTTGGCCAT GGATATGACC
CGCATTCGTA GCGCTAGCGA CCGCTTGTTG AGCTTGATCG ATGGCGTTCT GACGATTACC
GATCTTGATG CGGAAGTTGT GCGTTTGGAG TATGAAACGA TCGATTTGGC GCTGGCGATT
GGCAGCATCA GCGACCAATT GCAAGCCAAA GCCCAAGATA ACAAAAATAC TGTGCAATTA
TTGGGTAGCC AAAACTGGGG TTCGATTATC AGCGATGATC ATAAATTGCG CATGATTATT
TACCATCTGC TGGATAATGC AATTAAATTC ACCCACGCAG GCTTAATTAG CATCTCGGTG
CAACGCTTGC AACACGCTGC TGGCGGTTGG CTCGAAATTG CAATTCGCGA TACGGGGATT
GGCATTGCCC ATGAGCAATT TGAACGGATT TTTGAGCCAT TTGTTCAAGC CGATTCCTCG
GCCACTCGCC AATATGAAGG TACCGGTTTG GGCTTGGCCG TGAGCATGCG GCTGGCTCGT
GCTTTGGGTG GCACGATCGA GCTTGATAGC CGCTTAGGGA TTGGCTCAAC GTTTACTCTG
CATATGCCCG AACATCCCAC CAAACCCAAT GTGCCTTCAC CTCAAATGTC ACACGCGAAC
GTATAG
|
|---|
| Protein sequence | MSDQPAASDS AASTNLQTAL NAEVAFGLRP TVTGLGFLYL LFSIAHALVL PSPIKLPMVI
VALSSVIFFG FWWWRLQSWR PAPELTHPLA TLFIVVGGFN SVLHIWLSGE IHQSTNIAFI
LIGTGCLLLS WNWFIVASGA ILLAWIAAII SLPTSPLTMH FIFMVVSATI AAATIQGIRL
RTVKGLIKLR LQESTYKQEL QEALIQIKMS EERFRALAEA TSEGVVLQDE GVVMDANERF
GEMFGYHRDE ILGHSLREFV EPQSLQRAMQ KYKDGAPYEV TALRKDGSTF IALVLGTNLP
YSNRVVRVAA VRDITEQRHF ENLLLTAKDD AEAANRAKST FLSTVSHELR TPLNAIVGYS
EMIYEDLIDR SMPELAMDMT RIRSASDRLL SLIDGVLTIT DLDAEVVRLE YETIDLALAI
GSISDQLQAK AQDNKNTVQL LGSQNWGSII SDDHKLRMII YHLLDNAIKF THAGLISISV
QRLQHAAGGW LEIAIRDTGI GIAHEQFERI FEPFVQADSS ATRQYEGTGL GLAVSMRLAR
ALGGTIELDS RLGIGSTFTL HMPEHPTKPN VPSPQMSHAN V
|
|---|
| |