| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Haur_4389 |
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| Symbol | |
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| ID | 5736239 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Herpetosiphon aurantiacus ATCC 23779 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009972 |
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| Strand | + |
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| Start bp | 5606211 |
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| End bp | 5608592 |
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| Gene Length | 2382 bp |
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| Protein Length | 793 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 641281551 |
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| Product | DNA topoisomerase I |
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| Protein accession | YP_001547149 |
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| Protein GI | 159900902 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0550] Topoisomerase IA
[COG0551] Zn-finger domain associated with topoisomerase type I |
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| TIGRFAM ID | [TIGR01051] DNA topoisomerase I, bacterial |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.00166014 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGATCATA AATTGGTGAT TGTTGAGTCG CCAGCCAAAG CAAAAACTAT TCAAAAATAT
CTGGGTGCTG GCTATCGCGT TATGGCGAGT ATGGGCCATG TGCGTGATTT GCCCAAGAGT
AAAATTGGCA TTGATATTGA CAATGATTTT AGCCCTGTCT ATGAAATTAG CGAGGGCAAA
GATAAGCTCA TTGCCGAATT GAAGCGCGAA ATCAAGACTG CTGATGCTAT TTACCTCGCA
ACCGACCACG ACCGCGAAGG CGAGGCGATC GCTTGGCATA TTTTACAAGC AGCTAATATT
GGCAAACGTA AGCCAGTCTA TCGCATTACC TTTAACGAAA TTACCAAGGA TTCGATTCAG
CACGCCATTC GCAATCCGCG CGAAATCGAC GCAAACCTAG TTGATGCCCA ACAGGCACGA
CGGGTGCTTG ATCGCTTGGT TGGCTATAAA ATTTCACCAA TTTTGTGGGC CAAGGTGCGG
CGCGGGCTTT CGGCTGGGCG GGTGCAATCG GTTGCTGTGC GTATGGTGGT TGAGCGTGAA
CGCGAAATCG AAAGCTTCGT GCCCAAAGAA TATTGGACGA TCGAGGCCGA TTTATCGCCA
GCTGGGCTGA AGAAACTTGG CAAGCACGAT ATTTTTCGCG CAATCTTGCA TGCTCGCAAT
GGCAAAAAGC TCGATAAATT TGCGATTCCT AGCAAAGATG CTGCTGATGC AGTTTTGGCT
GCCTTGGAAG GGGCAAATTA TCTTGTTGGC ACTGTAACCC GCAAGGATAA ACGGCGCTCG
CCAGCCCCGC CATTTATCAC CAGTACCCTG CAACAAGAAG CTAGCCGCAA GCTTGGGTTT
AGCTCCAAAC GCACTATGCA AGTGGCCCAA AAACTGTATG AAGGGGTCGA TATTGGTGGC
AAAGATGGTA CAGTTGGTCT GATTACCTAT ATGCGTACCG ATTCAACCAA CGTTTCAGTC
GATGCCCAAA CCGAGGCTCG TACACTGATT ACTGAACTCT ATGGCAAAGA GTACGTTCCA
GCTAAGCCCA ATATCTACAA AACCAAGGCT AAAGGTGCGC AGGAAGCTCA CGAGGCGATC
CGCCCAACCA GCGTAGTCCG CCGCCCTGAT CAATTAAAAA CAGCGCTTGG CCGCGATGAG
TTTCGGCTTT ACGACTTGAT CTGGAAGCGC TTTATGGCTT CGCAGATGGC GGCGGCAATT
TTTGATAGTA CGAGCGTCGA TATTGGTGCT GGGGCCGGAA TCAAAACTGC TGCTGGAGCG
CCATTTACCT TCCGCGCAAC TGGCTCAGTG CTCAAATTCA ATGGCTTTTT GGCAGTCTAC
AACGTCAGCC TCGATGAAGG CGACGAAGAT GAAGACAAAG AGGCCTTGTT GCCGCCGCTC
AACGAAGGCC AAGCCCTCGA TTTGCATGAT CTCTTTGGCG AGCAACATTT CACTACGCCA
CCACCACGCT ATACCGAAGC AACCTTGGTT AAGCAGATGG AAAGTGAAGG GATTGGTCGC
CCATCAACCT ATGCGCCGAC GATCTCAACC ATCGTTGCCC GCGAATATGT TGAGTTGGTC
GAAAAGAAAT TGATGCCCAC CACCTTAGGC CGGGTTGTGA CCGACTTGCT AGTTGAGCAC
TTCAAAGATA TTGTCGATTA CAACTTTACT TCGGATATGG AACAGCGGCT TGATGATATC
GCTGAAGGCC AACGTCGTTG GGTGCCAGTG CTGCGCGAAT TTTACGATCC GTTTGCTGTA
CGCTTGCATG CTGCCGAAAC CGAAATGCGC AACGTCAAGC GCGAAGAAAT CAAAACTGAA
TTGCCCTGCC CGCAATGTGG CACGCATCTG GTGATCAAAT GGGGGCGTAA TGGCGAATTC
TTGGCTTGTT CGCGTTACCC TGAGTGTAGC TGGACGGGTG ATTTAGAGCG TGATGGCGAT
GGCGGGATTC ATATCGCCTC GCAGCCTGAA ATTTTTGGCA ACACCAATTG CCCTGAATGC
GACAACCCAA TGAGCCTCAA AAAAGGTCGT TTTGGGCCGT TTCTCGCCTG TAACAACTAC
CCAACTTGTA AGGGTATTCG CAAAGTACGG GCGCAAGGCA AAGATTTTGT GGTGATTCCG
CCGCCTAAGC CAACCGAGGA AAAATGCCCC AAATGTAACC GCCCAATGGT GCAAAAAGAG
GGCAAATTTG GGCCATTCTT ATCATGCACC GGCTACCCTG AATGCCGCTC GATTGTACGA
TTAACGCCCA ACGATGCCCC AACCTGCCCT CAATGTGGTG AGGGTAAAGT TGTCGCCAAA
CGTGCGCGTG GTGGCCGTAC CTTCTTCTCT TGCACACGCT ACCCCGATTG TACGTATGCG
AGTAACGCCT TACCTGTGGC GGTTTCCGAA GAAGTAGCCT AA
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| Protein sequence | MDHKLVIVES PAKAKTIQKY LGAGYRVMAS MGHVRDLPKS KIGIDIDNDF SPVYEISEGK
DKLIAELKRE IKTADAIYLA TDHDREGEAI AWHILQAANI GKRKPVYRIT FNEITKDSIQ
HAIRNPREID ANLVDAQQAR RVLDRLVGYK ISPILWAKVR RGLSAGRVQS VAVRMVVERE
REIESFVPKE YWTIEADLSP AGLKKLGKHD IFRAILHARN GKKLDKFAIP SKDAADAVLA
ALEGANYLVG TVTRKDKRRS PAPPFITSTL QQEASRKLGF SSKRTMQVAQ KLYEGVDIGG
KDGTVGLITY MRTDSTNVSV DAQTEARTLI TELYGKEYVP AKPNIYKTKA KGAQEAHEAI
RPTSVVRRPD QLKTALGRDE FRLYDLIWKR FMASQMAAAI FDSTSVDIGA GAGIKTAAGA
PFTFRATGSV LKFNGFLAVY NVSLDEGDED EDKEALLPPL NEGQALDLHD LFGEQHFTTP
PPRYTEATLV KQMESEGIGR PSTYAPTIST IVAREYVELV EKKLMPTTLG RVVTDLLVEH
FKDIVDYNFT SDMEQRLDDI AEGQRRWVPV LREFYDPFAV RLHAAETEMR NVKREEIKTE
LPCPQCGTHL VIKWGRNGEF LACSRYPECS WTGDLERDGD GGIHIASQPE IFGNTNCPEC
DNPMSLKKGR FGPFLACNNY PTCKGIRKVR AQGKDFVVIP PPKPTEEKCP KCNRPMVQKE
GKFGPFLSCT GYPECRSIVR LTPNDAPTCP QCGEGKVVAK RARGGRTFFS CTRYPDCTYA
SNALPVAVSE EVA
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