Gene Haur_4340 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHaur_4340 
Symbol 
ID5736200 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameHerpetosiphon aurantiacus ATCC 23779 
KingdomBacteria 
Replicon accessionNC_009972 
Strand- 
Start bp5547890 
End bp5549014 
Gene Length1125 bp 
Protein Length374 aa 
Translation table11 
GC content51% 
IMG OID641281501 
Productsolute-binding protein 
Protein accessionYP_001547100 
Protein GI159900853 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG4213] ABC-type xylose transport system, periplasmic component 
TIGRFAM ID[TIGR02634] D-xylose ABC transporter, substrate-binding protein 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAACGTGC GGCGTAGCGC ATTCACTTCC CTCTTGTTGA TCCTCATCTC TAGCGTGATT 
GCAGCCTGTG GTAGCGAAAG CGCTACAACT GCTCCAACCA CAGGCACTGG TGGCACAACC 
AGCAGTGGCG GCAAAGTAGT CGCTTTGTTC TTGCCCGATG CCAAAACTGC CCGCTATGAA 
ACTGCCGACC GCCCCTACTT CGAAGCCAAA ATGAAAGAGC TTTGCCCAGA TTGTCAGGTG 
ATTTACAACA ACGCCAACCA AGATGCCAGC TTGCAATTGC AACAAGCTGA AGCAGCGTTG 
ACCAACGGCG CAAAGGTTTT GGTGCTTGAC CCAGTTGATT CTGCTGCTGC TGCTTCGATT 
GCCGACAAAG CCAAAGCCCA AAATGTGCCA GTCATCGCCT ACGACCGCTT GATCCTTAAC 
TCGGATGGCG TGAGCTACTA CATTTCATTC GACAACGAAT CAGTTGGCAA GTTGCAAGCC 
GAAAGCTTGG TTGCGCAATT AGACAAGCAA GGGATTGCCA ACCCAACTAT CGTCATGATC 
AACGGCTCAC CAACCGACAA CAATGCTAAA TTGTTCAAAG CTGGCGCTCA CAGCGTGTTT 
GATCCATTGG TTAGCGCTGG CAAATTGACC ATCGCCAACG AATATGACAC TCCCGACTGG 
AGCCCCGACA AAGCCCAAGA CCAAATGCAA CAAGCCTTGA CCAGCATGGG TAACAAAGTT 
GATGGCGTAT ATGCTGCCAA CGACGGTACT GGTGGCGGGG CGATTGCCGC TATGAAGGCT 
GGTGGTCTCT CACCATTGCC TCCAGTCACA GGCCAAGATG CTGAATTGGC GGCGATTCAA 
CGGATTTTGG CTGGCGATCA ATACATGACC GTGTACAAAG CGATCAAGCC ACAAGCCGAA 
GCTGCTGCTG AATTGGCCTT TGCCTTGCTC GAAGGCAAAA CCAGCGACAA AGCTACCAGC 
AAAGTCAACA ATGGCAAAAT TGATGTTCCT TCAATCTTGC TGACCCCAAT TGCTGTGACC 
AAAGAAAACG TCAAAGACAC GATTGTCAAA GACCAATTCC ACAAAGTTGA TCAGATCTGT 
GCTGGCGACT TCGCCAAAGC CTGTGCTGAT GCCGGTATTC AATAA
 
Protein sequence
MNVRRSAFTS LLLILISSVI AACGSESATT APTTGTGGTT SSGGKVVALF LPDAKTARYE 
TADRPYFEAK MKELCPDCQV IYNNANQDAS LQLQQAEAAL TNGAKVLVLD PVDSAAAASI 
ADKAKAQNVP VIAYDRLILN SDGVSYYISF DNESVGKLQA ESLVAQLDKQ GIANPTIVMI 
NGSPTDNNAK LFKAGAHSVF DPLVSAGKLT IANEYDTPDW SPDKAQDQMQ QALTSMGNKV 
DGVYAANDGT GGGAIAAMKA GGLSPLPPVT GQDAELAAIQ RILAGDQYMT VYKAIKPQAE 
AAAELAFALL EGKTSDKATS KVNNGKIDVP SILLTPIAVT KENVKDTIVK DQFHKVDQIC 
AGDFAKACAD AGIQ