| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Haur_3739 |
|---|
| Symbol | |
|---|
| ID | 5735603 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Herpetosiphon aurantiacus ATCC 23779 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009972 |
|---|
| Strand | - |
|---|
| Start bp | 4699281 |
|---|
| End bp | 4702013 |
|---|
| Gene Length | 2733 bp |
|---|
| Protein Length | 910 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 641280891 |
|---|
| Product | XRE family transcriptional regulator |
|---|
| Protein accession | YP_001546503 |
|---|
| Protein GI | 159900256 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG3903] Predicted ATPase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.0768606 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACTAAGC TTGATGCCTC TTTTGGAATG TGGCTTAAAC AACGCCGAAA GACCCTCGAT
CTGACCCAAG ACGAGTTGGC TCATTTGGTT GGCTGTGCCA CGGTCACGAT TCGTAAAATT
GAAGCTAATA CGCTTAAGCC TTCAACCCAG ATTGCTCAGC GCTTAGCCCA ATGTTGTAAT
GTTCCTGAAG CTGAACATAC AGCATTTGTT CATTTTGCGC GTTCGGAAAC AACCACTGGG
CCAGTATGGT CTGACCAAAC GCCAGGTGCT GCACGGGTCA ATTTTGTGGT CGATCAACCA
CCCCACAATT TGGTTGATTT ACCCAATCCA TTGATTGGTC GTGATGCTGA TGTTGCGACC
ATCAATGAGC GTTTGGCCAA CGAGCATGTG CGTTTATTAA CTTTGGTTGG CCCGCCCGGG
GTTGGCAAAA CTCGTTTAGC GTTGCAAGTA GCCCAACAAC AACTTGAGCG CTTCCGCCAT
GGGGTGTTTG TCGTAGCCCT CGCTCCCGTA ACCAATCCTC AAGATGTGTT GAGCGTGATC
GCGCAAACCC TAGGAATCAA AGAAACTGGC ATTCGTCGCA GCTTCGAAGA TCTCAAAAAT
TTTTTGTACG ACCGTGAATT ATTATTGGTG CTGGATAATT TCGAGCAGGT GTTGCCCGCC
GCTAGCTCAA TCGATCAGCT GATTCAGGCT TGTTATGGGC TGAAGGTGTT GGTCACTAGC
CGCGAGGCTT TGCGCTTACG CCGTGAACGC CGTTTTGCGG TTGCGCCGTT GGCTATCGCA
ACTCCCGTCA GCGATGAGCC AAGCGCCACG TTCTCGCCAG CTGTAGCACT GTTTATTGAG
CGAGCACAGG CCGTCAATCC CGATTTTGAG ATTAACGAAA CCAGTCTGCA CGATATTAGT
GCCGTTTGTC GCCAGCTTGA TGGCCTGCCG TTGAGTATTG AGTTGATTGC TGCCCGCAGT
ATGTTGCTGG CACCCAAAGC GATGTTGCGC CATCTTGAGC ATCAATTAAC CGTCTTAACT
AGCCGATCGT CTGATCATCC GCCGCGCCAA CGCACCCTGC GTGATGCAAT TCGTTGGAGT
GTCGATCTGC TTGAGCCAAG CGATCAGCAG ATGTTTATGC ATGTCGGGGT TTTTCCACAA
AGCTGTACGC TTGAGTCACT TGCCGCCGTC GGGGCTGAGC AAGCTTGGGC ACTCGATTTG
CTCGATGGCT TAAATACCCT CGCCGATAAA AGTTTGCTCT ACGCCAAGGC TGATCAACAG
GGCGAAACGC GCTTTGAGAT GTTGAATGTG TTGCGCGAAT ATGCCCGCGA GATGTTGCAA
CACGCTGGTT TGTTGATCCA AGCTGCCCAA CGCCATGCCC AATATTATTT GCAGTTGGCG
CAAATCCTCC AAGCCGATCT CAGTCAGCAT AACCAACATG TGACCGCTGG CGATCGTTTT
GAGCGCGATT TATTCAATTT TCGGGCGGCC TTAGAATTTT TCTTTACCCA ACGCCAAATC
GAACAAAATG TTCAGCTTGC TACCAGTTTG GCCGATTTGT GGTATTTGCG CGGCTATGCT
GGTGAGGGTC GGCGTTGGCT GGCTCAAGCA ATTGAGCAAG CCCAAACCAC CCAAACTACG
CTTGAGCCAA CCCTCTGGAT CGAGGCACTC AATGCTGCGG GCTACTTGGC CTATCATCAA
GGCGATTATG GCGATGCCGC CCAAACCTTC TCGCAAAGCC GCCAGCTGAT CGAAACTGCC
AATGATCAGG TTGGCATGGC GCGGGTCTAC AATAATTTGG GCTTAATTGC TCATTGGCAA
GGCCAATATG CCCAATCTGA GGCTTTGCTC AACGATAGTT TGCAAATTTG GCGCAAACTT
GATCTATCGA TGGCGATTAG TAGTTTGGTC TGTAATCTTG GGGCGCTTCA GCTTGATCGT
GGTGAATTGA GCCAAGCTGC CGAGTTGCTT GAACAAAGCA AAGTGCTCTG TCAGCAACAG
CATTATGAAA ATCGCATCTC AATGGTTCTG CAACATCAAG GTAAATTGGC GCTCTACCGT
GGCGATTATG CCACCGCCCA GCGTTGTTTC AGCGAAAGTC AGGCCATCGC CGAGCAGATG
AGCAATAAAA CCGTGATTGG TTTTGCCCTG ATGTACCAAG GCTATGCCAC GCTGGCCGCA
GGCGAATTGG AGCAAGCCGC CTGTTATTTG AGCAAAGCTG CCCAGATGAG CCAAGATCTT
GGTAGCAAGC ATATGGTGTG TATGGTGTTG GCGGTGCAGG CACAGTTGGC TGTCGAACAA
GCCCAATACG TGGTAGCCCG CCAGTTATTT ACCCAAGCCT TGGAGTTAGG CCGCAGCATG
CAATTTGGCA CAGGTATTGC CAATGCCTTG CGTGGTTTGG CGCTGGTCGA TGCGATTCAA
GGCCACTATA GCCCAGCGTT AGAGCAAATT AACCAAGCAA TTCAAGGCTA TCGTACCATC
GGCAACCCCG AAGGCTTAAT TCAATCGCTT GAAACCTTGG CATTTTGTTT GACAACCATG
GGCTATGGCA AGACAATCGC GCCTGTTGTC GCTGCGCTCG AACAGTTGCG CCACGAATAT
GGCTTGCGGC GCTGGAACAA TCAACAAGCT CGTTGGCAAC AGATTCAACA GGCTCTAGCA
CAGCCTGATC AATCAAACTT GCCAGCCGAG CCAATTGTTG CCCAATTACT CGACCAGATG
CCTAGCCTGA AACTGCGTGA GCTGCGCACA TGA
|
|---|
| Protein sequence | MTKLDASFGM WLKQRRKTLD LTQDELAHLV GCATVTIRKI EANTLKPSTQ IAQRLAQCCN
VPEAEHTAFV HFARSETTTG PVWSDQTPGA ARVNFVVDQP PHNLVDLPNP LIGRDADVAT
INERLANEHV RLLTLVGPPG VGKTRLALQV AQQQLERFRH GVFVVALAPV TNPQDVLSVI
AQTLGIKETG IRRSFEDLKN FLYDRELLLV LDNFEQVLPA ASSIDQLIQA CYGLKVLVTS
REALRLRRER RFAVAPLAIA TPVSDEPSAT FSPAVALFIE RAQAVNPDFE INETSLHDIS
AVCRQLDGLP LSIELIAARS MLLAPKAMLR HLEHQLTVLT SRSSDHPPRQ RTLRDAIRWS
VDLLEPSDQQ MFMHVGVFPQ SCTLESLAAV GAEQAWALDL LDGLNTLADK SLLYAKADQQ
GETRFEMLNV LREYAREMLQ HAGLLIQAAQ RHAQYYLQLA QILQADLSQH NQHVTAGDRF
ERDLFNFRAA LEFFFTQRQI EQNVQLATSL ADLWYLRGYA GEGRRWLAQA IEQAQTTQTT
LEPTLWIEAL NAAGYLAYHQ GDYGDAAQTF SQSRQLIETA NDQVGMARVY NNLGLIAHWQ
GQYAQSEALL NDSLQIWRKL DLSMAISSLV CNLGALQLDR GELSQAAELL EQSKVLCQQQ
HYENRISMVL QHQGKLALYR GDYATAQRCF SESQAIAEQM SNKTVIGFAL MYQGYATLAA
GELEQAACYL SKAAQMSQDL GSKHMVCMVL AVQAQLAVEQ AQYVVARQLF TQALELGRSM
QFGTGIANAL RGLALVDAIQ GHYSPALEQI NQAIQGYRTI GNPEGLIQSL ETLAFCLTTM
GYGKTIAPVV AALEQLRHEY GLRRWNNQQA RWQQIQQALA QPDQSNLPAE PIVAQLLDQM
PSLKLRELRT
|
|---|
| |