Gene Haur_3613 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHaur_3613 
Symbol 
ID5735474 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameHerpetosiphon aurantiacus ATCC 23779 
KingdomBacteria 
Replicon accessionNC_009972 
Strand
Start bp4541841 
End bp4544000 
Gene Length2160 bp 
Protein Length719 aa 
Translation table11 
GC content52% 
IMG OID641280762 
ProductRecD/TraA family helicase 
Protein accessionYP_001546377 
Protein GI159900130 
COG category[L] Replication, recombination and repair 
COG ID[COG0507] ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member 
TIGRFAM ID[TIGR01448] helicase, putative, RecD/TraA family 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGATCAAC TAACAGGCAA CCTAGAACGC ATCACCTATC GCTCGGATGA AACGGGCTAT 
ACCGTGGCGC GTTTGAAAGC CCAAGGCCAG CGCAGCGTGA TCACAATTGT TGGGCGTTTG
CCCGATGTGC AAGTTGGCGA ACAGTTGCAA CTTGAAGGCC AATGGATCGA GCATCGAACC
CATGGCCGCC AATTTGAAGT TGCTAGCTAT CAAACTGCCC GGCCAACTGG CAACGAAAGT
ATTGTGCGCT ACTTGGCATC GGGCTTATTG CCAGGCATTG GTCCAGTCAA TGCCCAACGC
ATCGCTGATA CCTTTGGTGA AGCCACGCTC GATGTACTTG ATACTATGCC CGAACGCTTA
CGCGAAGTAA AAGGCTTAGG CACGAAGAAA ATTGCCGCAA TTATCGTAGC CTGGCAAGAA
CAACGTGCAA TCAAAGCCTT GCTCGAATTG GGCCAAGCCG TTGGGTTAAC GACAGGTTTA
GCCTTACGCA TTTTTCGGCA CTATGGCGAG CAGGCTAGCC AGATTGTGCA ACACGACCCT
TATCGTCTAG CCTTAGAAAT TGAAGGCATT GGCTTTCCGA CTGCCGACCA CATTGCCCAA
GCTTTGGGCG TAGCGCGAGA TGCTCCCAGT CGGGTGATTG CTGGATTGCG CTATACCCTC
AGCATGGTTG CCAACACCGA AGGCCATTGC GCTCTGCCCC AAATCGAGTT AATCGCGCAA
ACTCAAACCA TCCTAGAATT ACCCCATGAG CTGATTGCCG AACAATTGGC GGTGGCAACC
GAATCAGTGT TATTGGTGCT TGATGGCGAT CTAGTCTATT TACCAGCCTA TTATCATGCT
GAAACCGAGT TAGCACATAA CTTGCAGCGC TTGCAACAGC TCCCCAGTGC AATCCAATTG
CGCTTCAAGC AGCAAAGCGA TGCGATTATT ATGCGCCAAT TGCATAATGC GAGCTTCGAT
TTGAGCCAAC GCCAAGCCGA AGCCGTGCTG GCCGTGCTCC GCTCCAAAGT GGTGTTGCTA
ACTGGCGGGC CTGGCACAGG CAAAACCACC ACAGTCCGCG CAATTTTGGC CTTGCTCCAA
CAAGTTGGGT TACGCACAAT TTTGGCGGCT CCAACCGGAC GCGCCGCCCG TCGTCTCGCC
GAAACCACCA ATCATCCAGC TGCCACAATT CATCGCACCC TCGAATATAG CGGCGGCGCT
GGCAATGACC GCTGGGGCCG CAACGAACAT GCCCAACTAG TTGCCGATTT AGTGGTCATC
GACGAAACCT CAATGCTCGA CATTGTGCTG GCCCATCATA TGGTCAAGGC CTTGGCTCCA
ACCACCCATT TGCTCTTGGT TGGCGATCCT GATCAGTTGC CAGCAGTTGG GCCAGGCGCT
GTATTGCGCG ATTTGTTGGC TAGCAACCGC ATCACAACCG TCCATTTGGA TACGATTTTT
CGCCAAGCCG CTGATAGCCA AATTATCACC AATGCCCATG CAATCAATCA AGGCCAGTTA
CCCAGCGTCA ATCAAGGTGA TTTCTATTGG TTTCCGCGCA GTAACCCAGC CGAATGCGGT
GCGATGATTG TGGATTTGTT GACTACCCGT ATTCCACGCC AATTCCCGCA ATTTGATCCT
CTGCGCGATA TTCAGGTGTT GGCAGCAACC CATCGGGGCG CGGCAGGCGT GCTCGAATTA
AACAGCCAAC TGCAAGCAGC ACTCAACCCG CCAAACACCA CTCGCCAAGA AGCCACGATT
GCTGGCACGC TCTTTCGCGA AGGTGATCGG GTTATTCAAA CCCGTAACAA TTATGATCTC
GATGTCAGCA ATGGCGATTT AGGCCTGATT CAAACGATTG ATCTCGAAGA ACGCACGGTT
AGCGTTTATT TTGACGATAC TCGCAACGTC GTCTATCAGT GGAATGAGTT TGATGAAGTG
GCCTTGGCGT ATGCAATTAG CGTACATAAA GCCCAAGGCT CAGAATATCC GGTGGTGATT
GTGCCAATGT TGCGTTATTA CAATGTGCTG CTCAACCGAC CGTTGCTGTA TACCGCCATC
ACTCGCGCTC GTCAATTGGT GATTCTGACT GGCGATTGGC AGGCCGTCGA ATTTGCGATT
GCCCAACGCC GCAGTGGGCA GCGCATCACG GGGTTAAGCC AACGCTTTGG GATGCATTGA
 
Protein sequence
MDQLTGNLER ITYRSDETGY TVARLKAQGQ RSVITIVGRL PDVQVGEQLQ LEGQWIEHRT 
HGRQFEVASY QTARPTGNES IVRYLASGLL PGIGPVNAQR IADTFGEATL DVLDTMPERL
REVKGLGTKK IAAIIVAWQE QRAIKALLEL GQAVGLTTGL ALRIFRHYGE QASQIVQHDP
YRLALEIEGI GFPTADHIAQ ALGVARDAPS RVIAGLRYTL SMVANTEGHC ALPQIELIAQ
TQTILELPHE LIAEQLAVAT ESVLLVLDGD LVYLPAYYHA ETELAHNLQR LQQLPSAIQL
RFKQQSDAII MRQLHNASFD LSQRQAEAVL AVLRSKVVLL TGGPGTGKTT TVRAILALLQ
QVGLRTILAA PTGRAARRLA ETTNHPAATI HRTLEYSGGA GNDRWGRNEH AQLVADLVVI
DETSMLDIVL AHHMVKALAP TTHLLLVGDP DQLPAVGPGA VLRDLLASNR ITTVHLDTIF
RQAADSQIIT NAHAINQGQL PSVNQGDFYW FPRSNPAECG AMIVDLLTTR IPRQFPQFDP
LRDIQVLAAT HRGAAGVLEL NSQLQAALNP PNTTRQEATI AGTLFREGDR VIQTRNNYDL
DVSNGDLGLI QTIDLEERTV SVYFDDTRNV VYQWNEFDEV ALAYAISVHK AQGSEYPVVI
VPMLRYYNVL LNRPLLYTAI TRARQLVILT GDWQAVEFAI AQRRSGQRIT GLSQRFGMH