| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Haur_3579 |
|---|
| Symbol | |
|---|
| ID | 5735440 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Herpetosiphon aurantiacus ATCC 23779 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009972 |
|---|
| Strand | + |
|---|
| Start bp | 4499827 |
|---|
| End bp | 4501332 |
|---|
| Gene Length | 1506 bp |
|---|
| Protein Length | 501 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 641280728 |
|---|
| Product | O-antigen polymerase |
|---|
| Protein accession | YP_001546343 |
|---|
| Protein GI | 159900096 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3307] Lipid A core - O-antigen ligase and related enzymes |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTGGCCA ACACACCGCA AGAAGAGCCA ACCAGCCAAC CAGATGTTTT TAACAGCAAA
TGGATGAAAT TTGCCTTTGC TTTTTTAGCG ATCGCTGGGG GCGCTGGGGT TGCCGCCGCC
TTGGCATTTT TCGATAACCC CTTGAAATTA GTGCTGCTGT TTGGTGGCGC TGGTGCAGCC
ATGGTCACAA TGCGCAATAG CGAATGGGGC TTGCTGGCAC TGGTGTTCAT GAGCTACACC
CGTTTTTCCG ATGTGATGGT GCGCAACGGA GCGCCCTCAA CCGCCCAACC ATTTTTAGCG
TTGCTCTTTT TAATTATTTT CTTGCGCTGG GCACTCTACA ACCAAAAACC CGAGCCTTGG
CTCAAGCCCG CCGCCTGGAT CTTTGTCTAT GGCATGGTTG GGGTCGCCAC ATTTCTCTAT
GCTGATGATG TCATGCGAGT TAAGAATGGG GTCATCACCT ACTTCAAAGA TGCGATTATC
GTGATCGTGG TGGTGATGAT GATGCGTTCG CCCAAGATGC TGCATCGTTC GATGTGGGCG
CTCTTGTTCG CTGGCATTTT TATGGCTTCG ATTACCACCT GGCAGCAATT AACTGGTACG
TTCGAGAACG ATTATTTGGG CTTTGCCAAA GCTGGCAAAA TGCAAATCGT CTCAGGCGTT
GAGGATGATT ATCGGATTGC TGGGCCAATC GGCGACCCTA ATTTCTATTC ACAAGTGCTC
TTGACCCTAA TTCCACTGGG CATGGATCGC ATGTGGAATG AGAAGAACAA AAAATTACGC
TGGTTTGCAA TTTGGCAATT GAGCGTTTGT ATGGCCTCAA TTTTCTTCTC GTTCAGTCGT
GGGGCATTTC TCTCGCTCTC GATTGCCAGC TTAATTATGT TTGTGCGCCG ACCACCCAAG
CCGCTTTCGG TGATCATTAT CATCGCTTTG GGTTTTGTAA TCATCCCGAC CTTGCCAGCT
TCGTATATCG CGCGGCTCGA AACGATTCCC GAGGCAATTC CCGGCTTAGC TCAAGAAGAT
GTGCGCAACG AGGCTTCGTT CCGTGGCCGT TCGAGCGCCC AACAAGCGGG TTTACGCATG
TTCTGGGCTA ACCCAGTTTT TGGCTTAGGT GTGGGCAATT TTGGCAATCA CTATCAAGAA
TATGCCCGTG ATCTAGGACT TGATAACAGC CGTTGGGACC AAGCGCCGCA CAACATGTAC
CTTGAAATTC TGACCGAAAA AGGCTTATTT GGGCTTTCGG TCTTTAGCGC AATGATGTGG
GTGCTGTTCC GCGATATGAA CCGAGCACGT AAAAAGTTTC GCGAAATCAA TATGGGCGAT
TTCGATGGTC TGATCTTTGG TTTCCAGGCT GGGTTGGTTG GCTATATGTT TGCCGGGATC
TTCCTGCAAC TATCCTACCC ACGCTTTTTC TGGATTTTGA TCGCCATCGC CTATGCAATT
CCCAATGTTG CCAATAAAGC TTATGAAGAG TATCGCGAGG CGCTACCAAA TGGCGAAACA
GCCTGA
|
|---|
| Protein sequence | MLANTPQEEP TSQPDVFNSK WMKFAFAFLA IAGGAGVAAA LAFFDNPLKL VLLFGGAGAA
MVTMRNSEWG LLALVFMSYT RFSDVMVRNG APSTAQPFLA LLFLIIFLRW ALYNQKPEPW
LKPAAWIFVY GMVGVATFLY ADDVMRVKNG VITYFKDAII VIVVVMMMRS PKMLHRSMWA
LLFAGIFMAS ITTWQQLTGT FENDYLGFAK AGKMQIVSGV EDDYRIAGPI GDPNFYSQVL
LTLIPLGMDR MWNEKNKKLR WFAIWQLSVC MASIFFSFSR GAFLSLSIAS LIMFVRRPPK
PLSVIIIIAL GFVIIPTLPA SYIARLETIP EAIPGLAQED VRNEASFRGR SSAQQAGLRM
FWANPVFGLG VGNFGNHYQE YARDLGLDNS RWDQAPHNMY LEILTEKGLF GLSVFSAMMW
VLFRDMNRAR KKFREINMGD FDGLIFGFQA GLVGYMFAGI FLQLSYPRFF WILIAIAYAI
PNVANKAYEE YREALPNGET A
|
|---|
| |