| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Haur_3546 |
|---|
| Symbol | |
|---|
| ID | 5735405 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Herpetosiphon aurantiacus ATCC 23779 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009972 |
|---|
| Strand | + |
|---|
| Start bp | 4462649 |
|---|
| End bp | 4463671 |
|---|
| Gene Length | 1023 bp |
|---|
| Protein Length | 340 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 641280693 |
|---|
| Product | uroporphyrinogen decarboxylase |
|---|
| Protein accession | YP_001546310 |
|---|
| Protein GI | 159900063 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0407] Uroporphyrinogen-III decarboxylase |
|---|
| TIGRFAM ID | [TIGR01464] uroporphyrinogen decarboxylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAAGATC GATTTTTACG GGCCTGTCGG CGCGAAGCTG TGGATGCCAC CCCAGTTTGG
TTTATGCGTC AGGCTGGCCG TGCGCTGCCC GAATACCGTG CCATCCGCGA GCAATATGGC
TTTATGGATA TTTGCTATCA GCCCGAATTG TGTGCTGAAG TAACTTTGCA GCCAGTGCGC
CGTTTGGGTG TTGATGCAGC AATTATGTTT GCCGATATTA TGACCCCGTT GATTGCGACT
GGGGTGGGCG TTGATTTGGT TGAAAGCATC GGCCCAGTGG TTGCCAACCC CATTCGCACG
ATGGCCGATG TTAGCCGCAT TCGGCCAATT GAGCCAGAAG TTGATGTGCC TTACATTAGC
AAATCGATTC ATTTGCTCAA AGCTGAGTTG GGCCAAACAC CCTTAATTGG CTTTGCTGGC
GCACCATTTA CCTTGGCGGC CTACTTGGTC GAAGGCAAAG GCTCGAAGAA TTTTCTGAAT
ACCAAAGCGC TCATGTATGG CAGCCCCAAC GTGTGGAATG CCCTGATGGA GCGCTTGGCT
GACCTGACGA TCAGTTATTT GCGGGTGAAA ATTGCGGCTG GGGTTGATGC GCTACAACTT
TTTGATAGTT GGGTCGGCTG TTTAAGCCCC CACGATTATG CAACCTTTGT GCAACCCTAC
ACCGCCCGCA TTTTGAAAAC CCTACGCGAA GAAACCAACA TTCCATTAAT TCACTTTGGC
ACCAACACCA CCAATCTTTT GCCGTTGATG CGCAACGATG GTGGCTCAGT GCTCGGAGCC
GATTGGCGGA TTCCAATCGA CGAGGCTTGG GAACTAATTG GTGATGACAA AGCCATCCAA
GGCAATCTTG ATCCGGCGGT TTTGCTGGGG CCATGGGAAT ATGTTCGCGA ACAAGCTGCC
GATATTTTGC GCCGCGTCAA TCGCCGCCCA GGCCATATTT TCAACCTTGG TCATGGCATT
CACCCACAAA CTCCGGTTGC CAATCTCGAA CGCTTGGTGG CATTTATTCA CGAAAGAGCA
TAG
|
|---|
| Protein sequence | MQDRFLRACR REAVDATPVW FMRQAGRALP EYRAIREQYG FMDICYQPEL CAEVTLQPVR
RLGVDAAIMF ADIMTPLIAT GVGVDLVESI GPVVANPIRT MADVSRIRPI EPEVDVPYIS
KSIHLLKAEL GQTPLIGFAG APFTLAAYLV EGKGSKNFLN TKALMYGSPN VWNALMERLA
DLTISYLRVK IAAGVDALQL FDSWVGCLSP HDYATFVQPY TARILKTLRE ETNIPLIHFG
TNTTNLLPLM RNDGGSVLGA DWRIPIDEAW ELIGDDKAIQ GNLDPAVLLG PWEYVREQAA
DILRRVNRRP GHIFNLGHGI HPQTPVANLE RLVAFIHERA
|
|---|
| |