Gene Haur_3342 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHaur_3342 
Symbol 
ID5735212 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameHerpetosiphon aurantiacus ATCC 23779 
KingdomBacteria 
Replicon accessionNC_009972 
Strand
Start bp4213424 
End bp4214809 
Gene Length1386 bp 
Protein Length461 aa 
Translation table11 
GC content53% 
IMG OID641280489 
ProductLuxR family transcriptional regulator 
Protein accessionYP_001546106 
Protein GI159899859 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.7323 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCTGATC AATCACCACT CAGCGAGCGT GAAATCGAGG TCTTGCGCCA GCTCGCGCTG 
GGGGCAAGCA ATAACGAAAT TGCCAATACG CTGGTCATCA GCCCCAACAC AGTCAAAGTG
CATATTCGCA ATATCTACGC TAAGCTGGGG GTATTATCAC GGGCTGAGGC GACGCTTGAG
GCTGTGCGGC GCGGCCTGAT CGAGGTTTTG AATACTCCAA ATTCAGTGCC CGAGCCTGAG
CGCATTCCTG AGAGCGAGCC GCTCGTCAGT ATTCCAATTG ATGAGCCAAT CGCGCCTGAA
CCAATGCAGA TACCTAGCAC GACTCAGCCG ATCACAACTC CAGCACCCGA TCCGATTACC
CCAGTGATCA CCCAACCAAC CAATCAAATT ACAATTCCCC GAGCCTATGC ATTGGCGATT
TTGGGTGTGC TATTTGGGCT GATTGTGGCA GTGGTGGCAA TTGGCTGGTT TGTGGTACGC
GGCAACATCA CGCCAACCAC CCAGCCTGCG ACAACGCTTG TGAGCAATGT TTGGCAACCA
CTGACCGCAC TGCCCGAGCC AACCTACCAA CATGCCGGGG TTTTTCTAGC CGATAGTTTG
ATTGTGATTG GCGGCAACAC TGATACTGGC GTGGTGGCGC ATACCCGTCA ATTGAATTTG
GCAACCGGGG CGTGGCGTGA ACTGGCTAGC AAGCCAACGG CGGTGGCCTC TAGCGGCGCA
GTGCAGATTG CTGGCCAAAT TTATGTAGCA GGTGGCCGCG ATAAAAATGG TGCGGCTAGT
AATATTTTAG AGATTTTTGA CCTAGCCCAA AATCGTTGGC AAACTGGCCC AGCCATGCCT
GCCCCACGCG CCAATGCCAT GATTGCCGCT ATCGATGGCA AAGTTTATGT GTTTGGCGGC
GAGAATGAGG GGATCATCGC CGATACCAGC TTTATTTATA GCCCCGATAC CCAAAGCTGG
AGCCAAGGCC CGGCCATGCC ATTGGCCTTA CGTGATGCAG CCATTGCCCA AAGTGGCGGC
GATGTTGTAT TGATCGGCGG CCAAACCTCA ACTGGCCCCA GCCTTGGAAC CTGGCGTTTA
CAAACTGGCA CATGGCAAAA AATAACCGAT CTGCCAGCCC CACGAGTTGA CGCTGGCGCG
GTTTATATCA CCAATCAGAT CTATTTGGTG GGTGGAGCTG AGGGCGACCA AGCTATTTTG
GTGTTGCAAA ACAATATCTG GAATGCAACC GATTTGCGCA CCGGCCATGC AATCAGCGAA
CACCTCGTGC TTTCAAATGC TCGGGATATT TATAGCATTG GTGGTTGGAA CGGCACGAAT
GCGCTCGCTG AAACCCGTAG TTGGACTCCG ATTACCAATA TCTTCTTGCC AAGTGTGGGC
AAATAG
 
Protein sequence
MSDQSPLSER EIEVLRQLAL GASNNEIANT LVISPNTVKV HIRNIYAKLG VLSRAEATLE 
AVRRGLIEVL NTPNSVPEPE RIPESEPLVS IPIDEPIAPE PMQIPSTTQP ITTPAPDPIT
PVITQPTNQI TIPRAYALAI LGVLFGLIVA VVAIGWFVVR GNITPTTQPA TTLVSNVWQP
LTALPEPTYQ HAGVFLADSL IVIGGNTDTG VVAHTRQLNL ATGAWRELAS KPTAVASSGA
VQIAGQIYVA GGRDKNGAAS NILEIFDLAQ NRWQTGPAMP APRANAMIAA IDGKVYVFGG
ENEGIIADTS FIYSPDTQSW SQGPAMPLAL RDAAIAQSGG DVVLIGGQTS TGPSLGTWRL
QTGTWQKITD LPAPRVDAGA VYITNQIYLV GGAEGDQAIL VLQNNIWNAT DLRTGHAISE
HLVLSNARDI YSIGGWNGTN ALAETRSWTP ITNIFLPSVG K