| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Haur_3102 |
|---|
| Symbol | |
|---|
| ID | 5734974 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Herpetosiphon aurantiacus ATCC 23779 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009972 |
|---|
| Strand | + |
|---|
| Start bp | 3911222 |
|---|
| End bp | 3914857 |
|---|
| Gene Length | 3636 bp |
|---|
| Protein Length | 1211 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 641280246 |
|---|
| Product | GAF sensor signal transduction histidine kinase |
|---|
| Protein accession | YP_001545868 |
|---|
| Protein GI | 159899621 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2203] FOG: GAF domain
[COG2205] Osmosensitive K+ channel histidine kinase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTGTATGC AATCCCAAAA ACAGGCATTT GAAGATTCCT CAGCCCACTT TTTGCGCGAG
TGGCTCCCAC GTTTGGCAAC CGCCACGAGC ATTAATGGCT TGCACACAAA TTTAAGCGCC
GCCCTTCGCC AATTTCGCCA TAATCCCCAC TACCATTTGA TTTGGCTTGA TCTGGCCGAA
ACTCAGCCCG AAATTCCTTT AGAATTAATG CTCTCCAGCA ACCAACAGGA GCAGCTTGAG
CAAGGTGCAA TTTTAACCAT CACCACCGCT GATGCCACGC AATGGACGAT GCTGCCCCTG
TTGCACATTA CTTTGCGCGG TTGGTTGGCC TTGCCTGAAG CAACCCAAAA TGATCAATTG
CTCTTGCCCT TAGCGCTGCA AACTGCCGCC AGCATGTGTA CGATCACCAA CAATCAACAA
TTGGTGGCCG AACTGCGCGA GCTGACCCAA TTTAATTTGA TCAGCCAACG CCTGAATAGT
TCGCTCGAGC TTGGGCCGTT GATCGAGGCG GTGTATCGCG GCATCCAACA GATGTTTGGT
CCGCAAAATC TGTTTGTCTC GTTGTATGAT CCTGAGTCGC AGCTGTTTCA AGTGGCAGCG
CATTTTTACG CCGATGGCCG CAGCACGACC CCCAATTCGC AATGGACAGT TGCCCATGGC
TTAACTGGGG TGATTATTCG GCGCAACGAG CCAATTATCA CCGATCGCTA TCTCGAAACT
TGTGCCCAAT ATCATGTTAC GCCATTGTTT ATTGATGATG ATATTCCGCC GCTGTTTTGG
GCAGGTGTGC CGCTACGCTT CGGCGAACGG GTGCTTGGCA CGTTAGTGAT CTACACGCTT
GAGCCAGAGG TACGCTACAA CGCCGACACG TTACGCAAAT TGGAGATGTT GGCTCATCGT
GCGGCTGATA ATTTTGAGCA GGCACGGCTC TACGAACGCA CCACACGCCA AGCTCGCCAA
CTTGAATTAT TAAACGAACT TGGCCGCACC ATCACTTCAA CCCTCGATTT TGAGGCCGTG
CCATCGTTGA TCATGGGGCG GGTGCAAGAG CTTTTAAATG TTGAAGAGGG TTCGTTGTTG
TTGCTCGACG AAGCCACCAA CGAATTAGTC TTTCGTTATA GTCTGAGTCC AGTTGGCCAG
CAACTTTTGG GCAATCGTAT CCCGTCTAAT GTGGGGATTG CTGGCTTGGT GTTACGTACA
GGCGAATCAT TGATCGCCAA TCGTGCTGGC GATCATCCGG CGTTTTATAC GGGCATTGAT
ATGTTGGTGG GCCATGAAAC CCGCGATCTG CTGTGTGTGC CGTTGCTTGG CGCTGGCGGA
GTCAAAGGGG TGATCGAAAT TCTCAATCAT CGCAATGGCT TGCCATTTAC TGCCGCCGAC
CGCGCCTTGC TCGAAGCAGT GGCCGATCAA GCAGTAATTG CGATTGAAAA CTCTAATCTC
TACACCCAAA CCGACCAAGC CCTGACTCGC CGAATCAGCG AACTCGACCA GCGTAACAAG
CAATTTCAAG AGATTGTGCA AATTGGCAAT GCGCTCAAAG CTGCTTCAAA CCTTGGGTCG
GTCTTGCCAG CCTTAGCCGA GGCTGTGCAA AGTGCTACGG GCTTCAACCA AGTGACGATT
AGCCTCGTTC AAACTACGCC AGGCCATAAA GCAATTATCA AACGGGTCGT CAGCGCAGGT
ATCGATCGCC AAATTTTCGA GGCCCAAGCT AGCATTACGA TTGAGCCTGA GCGCGTCGAG
GCTTTGCTCA AACCGCAATA TCGCCGGGGT GAATCGACCT ACTATATCGA TCATCGGCGC
AATGGTGATG CGCGTTTATG GCCTGATCCC TCAAATGGAG TCGATGTGCC AGAGCTACGG
ACTGGCATGT GGCATCCCAA CGATAGCTTG TTTGCGGTGT TACGCAGCAC CAGCGGCGAT
CTTTTAGGTC TTTTGACGGT CTATGCACCA AAAAATGGCC TTCAGCCAAC CACTGATCAA
ATTCAAATGC TGGAGATTTT CGCCACGCAA TTGGCAGTTG CGCTCGAAAA CAATCGGCTC
TACGAACGCC AACGCCAAAC CGTCGAAGGC TTGACTGCCT TGAGTGCGCT TGGCATGGCG
ATCAACAGCA CCTTCAGCAA TGCGCAATCA ATTTGGCAAT TTACAGTTGG CGGGATGGTC
GATTGGACTG GCGCACTCGG CGCTGGGGTA TTACTCAGCG ATCCCAATGA TCCCACGACA
TTGCAACCAA TTGTCGGCTT GGGAATTGAG CACACACCTG ACGAGGCGAT TATTCAATTT
GCCCATAAAG TGCTGGAGCG TGATAAGCCC TTGTTGCTTG GCGATCGCAG CAAATTGCCG
AGTGTCTTAC GCGATTTAGG TGGTCAAGCC TTGGTGATGT TACCGTTGCT AGCAACCCAC
CAAACCTTGG GCGTGATCTA CTTGTGGTAT CCCGAAACCT TGCCCAACCG CGAAGCCCAA
GATTTGCTCT CGCTGTTTGT GGGCCAAGCC GCTGTGGCGG TCGAAACTCG GCGTTTGGCC
GAAGAAGTGA GCAATGGCCG CGATCGCTTA GCCTCGATTT TGGCTTCAAC CGAAGAAGGC
ATTATTTTGC TGAGCGCCGA TTTGCGGGTG GTCGAGGTCA ATGCCGCCGC TCAAACCATG
ATCGGCAGCA ACGAAGTCGC CGAATTGTTG GGAGAGCCAG TCGATTTGCT GCTTACCCAT
TGGTGCGCCC AGTGGAATAA ATCTGAGGAA GCTTGGAGCG AACTAACGCT GGCGATCTAC
AAAGTTAGTC GCGGGCGTTT GGCTGAGGCG CGGGGCCAGT TAGAATTGGG CGGTTTGCGC
AGCCAATGGC TCGAATGGAC AACTCTGCCA GTTCAAAGCG CGGCGAACCA AAGCCCTCAC
CCGATTATTA TTGTGCTACG CGATATTACC ACCGAGATCG AGGCCGAAAA TCTGCGCCAC
GACCTGACCT ATATGATGAT TCATGATTTG CGTGGGCCAC TGAGTTCGGT GATGACCTCG
TTGGATATGC TGGCCAAAAA GATGGTTGGC GACCTCAGCG AAGGCCAAGA TAAAATTGTC
AAAATCGCTT TGCGCAGTAG TGCTCGTCTG CTCGATATGG TTAATTTGCT GATGGATATT
AGCAAACTTG AAGCAGGCCA GATGCCAATC ACACCAATTA CGGTGGCGGT TGATGATGTG
GTGCGTTCGG TGATGCAAAA TTATGAGCCA TTGCTCAACG AGCGCAAAGT CCATGTAGCG
CTGAATATTG CTGAAAATAC CCCTAAAGCC TCGGTTGATA TCCAAACCCT AGAGCGGGTC
GTGCAAAACT TGCTGGATAA CGCGATTAAG TTCAGCCCAG CCTTATCAAC AATCACGATT
AGCGCCAACA AAGTTCAAGC CAATCAACTA CCAAGCGATC ACCCAACTGG TCAATGGATT
TTGTTGGGCG TGCGTGATGC TGGGCCTGGC ATTCCAGCCC AATATCGCGA ACGGGTCTTT
GAAAAGTTTG CCCAAGTCAA ACAAACTGGG ATCAAAGGCA CTGGGCTAGG CTTGACCTAC
TGTCGCTTGG CGGTCGAAAC CCACGGCGGG CGCATTTGGG TTGCCAATGA CGATGGCCCT
GGGGCGCTCT TCCTGCTGAC TATTCCGATA GCCTAA
|
|---|
| Protein sequence | MCMQSQKQAF EDSSAHFLRE WLPRLATATS INGLHTNLSA ALRQFRHNPH YHLIWLDLAE
TQPEIPLELM LSSNQQEQLE QGAILTITTA DATQWTMLPL LHITLRGWLA LPEATQNDQL
LLPLALQTAA SMCTITNNQQ LVAELRELTQ FNLISQRLNS SLELGPLIEA VYRGIQQMFG
PQNLFVSLYD PESQLFQVAA HFYADGRSTT PNSQWTVAHG LTGVIIRRNE PIITDRYLET
CAQYHVTPLF IDDDIPPLFW AGVPLRFGER VLGTLVIYTL EPEVRYNADT LRKLEMLAHR
AADNFEQARL YERTTRQARQ LELLNELGRT ITSTLDFEAV PSLIMGRVQE LLNVEEGSLL
LLDEATNELV FRYSLSPVGQ QLLGNRIPSN VGIAGLVLRT GESLIANRAG DHPAFYTGID
MLVGHETRDL LCVPLLGAGG VKGVIEILNH RNGLPFTAAD RALLEAVADQ AVIAIENSNL
YTQTDQALTR RISELDQRNK QFQEIVQIGN ALKAASNLGS VLPALAEAVQ SATGFNQVTI
SLVQTTPGHK AIIKRVVSAG IDRQIFEAQA SITIEPERVE ALLKPQYRRG ESTYYIDHRR
NGDARLWPDP SNGVDVPELR TGMWHPNDSL FAVLRSTSGD LLGLLTVYAP KNGLQPTTDQ
IQMLEIFATQ LAVALENNRL YERQRQTVEG LTALSALGMA INSTFSNAQS IWQFTVGGMV
DWTGALGAGV LLSDPNDPTT LQPIVGLGIE HTPDEAIIQF AHKVLERDKP LLLGDRSKLP
SVLRDLGGQA LVMLPLLATH QTLGVIYLWY PETLPNREAQ DLLSLFVGQA AVAVETRRLA
EEVSNGRDRL ASILASTEEG IILLSADLRV VEVNAAAQTM IGSNEVAELL GEPVDLLLTH
WCAQWNKSEE AWSELTLAIY KVSRGRLAEA RGQLELGGLR SQWLEWTTLP VQSAANQSPH
PIIIVLRDIT TEIEAENLRH DLTYMMIHDL RGPLSSVMTS LDMLAKKMVG DLSEGQDKIV
KIALRSSARL LDMVNLLMDI SKLEAGQMPI TPITVAVDDV VRSVMQNYEP LLNERKVHVA
LNIAENTPKA SVDIQTLERV VQNLLDNAIK FSPALSTITI SANKVQANQL PSDHPTGQWI
LLGVRDAGPG IPAQYRERVF EKFAQVKQTG IKGTGLGLTY CRLAVETHGG RIWVANDDGP
GALFLLTIPI A
|
|---|
| |