Gene Haur_2796 details

Gene Information

• Locus tag: Haur_2796
• Symbol: prfA
• ID: 5734677
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Herpetosiphon aurantiacus ATCC 23779
• Kingdom: Bacteria
• Replicon accession: NC_009972
• Strand: +
• Start bp: 3555041
• End bp: 3556138
• Gene Length: 1098 bp
• Protein Length: 365 aa
• Translation table: 11
• GC content: 53%
• IMG OID: 641279939
• Product: peptide chain release factor 1
• Protein accession: YP_001545562
• Protein GI: 159899315
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0216] Protein chain release factor A
• TIGRFAM ID: [TIGR00019] peptide chain release factor 1

Plasmid Coverage information

• Num covering plasmid clones: 2
• Plasmid unclonability p-value: 0.000135616
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGAACCAG AAATTTTAGC TCGTCTCGCG CGGGTCGAGG CGCGATATAT CGAACTCAAT 
GATGAAATGA CTCAGCCTGA TGCGCTGAGC GACCATGTGC GTTTAACTAC ATTGGCCCGC 
GAACAAACCG AACTTGGCGA ATTAGTCGGG CGGTATCGCG AGTTTATGCA GGCTGAAAAA 
TCGGTCGAAG AAGCCAAAGC CCTTCTGCGC GAGGAGAATG ATCCCGAGTT GCGCGAAATG 
GCTCAATTGG AGATCGATGA GCTTTCGGCT CGCATGGAAG CAATCGGGGC TGAAGTACGG 
GTTTTGCTCT TGCCACGTGA CCCCAACGAT GAAAAGAACG TGATCATCGA AATTCGCCAA 
GGCGAAGGTG GCGATGAAGC AGCACTCTTC GGCGCTGATG TCTATCGTAT GTACCAACGT 
TATGCCGAAA TTCGTGGTTG GAAAACCGAG GTTATGTCGC TCAGCGAAAA TGGTATCGGC 
GGCTTCAAAG AAGTTATTTT TGAAGTGCAA GGCCAAGGCG CTTGGAGCCG GCTTAAATAT 
GAGGGCGGCG TACATCGCGT TCAGCGCGTA CCAGCCACCG AGGCCCGTGG CCGAATTCAT 
ACCAGCACGA TCACGGTGGC GGTGTTACCA GAAGTCGAAG AAACTGCCGT CGAAATCAAG 
CAAGAAGATT ATCGCATCGA CGTGTATCGC TCAGGTGGTC ACGGCGGCCA AGGGGTCAAC 
ACCACCGACT CAGCCGTGCG GATCGTGTAC AAGGCTGGTA CGCCTGAAGA AATTGTGGTT 
GTTTGTCAAG ACACCCGTTC GCAAATCAAA AATCGCGAAA GTGCCTTGAA TGTGTTGCGG 
GCACGGCTCT ATGCGCGTGA GCAAGAAAAA CGCCAAAAAG AGCTTGGGGA ATCGCGCTTG 
GCTCAGGTTG GAAGCGGTGA GCGAGCTGAA AAAATGCGCA CCTACAACTA TCCTCAAGAC 
CGCATTACCG ATCATCGGAT TGGCCAAAAC ATCTCAAACC TGCCGGTTGT GCTTGATGGA 
GCGCTTGATC GCTTGATCGA TGCGCTAGTT ACCTTCGACA ACGCCGAACG GCTTAAGGCC 
TTGGGTATGG GAGCCTAG 

 

Protein sequence

MEPEILARLA RVEARYIELN DEMTQPDALS DHVRLTTLAR EQTELGELVG RYREFMQAEK 
SVEEAKALLR EENDPELREM AQLEIDELSA RMEAIGAEVR VLLLPRDPND EKNVIIEIRQ 
GEGGDEAALF GADVYRMYQR YAEIRGWKTE VMSLSENGIG GFKEVIFEVQ GQGAWSRLKY 
EGGVHRVQRV PATEARGRIH TSTITVAVLP EVEETAVEIK QEDYRIDVYR SGGHGGQGVN 
TTDSAVRIVY KAGTPEEIVV VCQDTRSQIK NRESALNVLR ARLYAREQEK RQKELGESRL 
AQVGSGERAE KMRTYNYPQD RITDHRIGQN ISNLPVVLDG ALDRLIDALV TFDNAERLKA 
LGMGA