| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Haur_2656 |
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| Symbol | |
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| ID | 5734536 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Herpetosiphon aurantiacus ATCC 23779 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009972 |
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| Strand | + |
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| Start bp | 3406156 |
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| End bp | 3409779 |
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| Gene Length | 3624 bp |
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| Protein Length | 1207 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 641279798 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_001545422 |
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| Protein GI | 159899175 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.0357057 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACAGATC ATGTTGATAC GTTGCTAGCA GATATTCAGG CGCTCTTTGC CAGCGAGCCG
CAGCTTAAAG CAGCCTTAGC AGCAGCCCAA CCCAATACAA CCCGCACAAT CACGCCTGTA
CCAAGTGCAG CACGCCGCGT CGTCGCCGCC ATCGCGACCC GGCAACATCG GAGCAGTTTG
TTGATTGCTG CTACACCTGA TGCCGCAGTA CGCATGCACG CCGACCTAAC CGCATGGCTC
GGCGAGAACG TCATGCTCTT TCCACCGACC GATACGCTGC CCTACGAGCA TATGTCGGCG
GATATTGGGA TTGTAGCGCA ACGTTTGGCA GTGCTCGGGC GCTTGCATGC TAGCGAACCG
ATCTGCGTAG TCGCTTCGGT CAAAGCCTTG ATGCAACCCA CCATGACCCC TGAAGAATTT
CAGTTTGCCA CGCGCTTGTT GCGCCAAGGC GACCAGCATG ATCCACGCAA GTTGCTCGCT
CACTGGGTCA GTTTGGGCTA TCGGGTTGGC CCAACCGCCG AACAACCAGG CGATCTCAGC
CAGCGCGGCG GGATTATCGA TATTTTTCCG CCAACCAGCG ATCGCCCAAT TCGGCTCGAA
TTTTGGGATG ATCAGCTCGA AAGTTTGCGT ATTTACGACC CAATCTCGCA GCGCTCAGAT
AAACGGGTGC GCCAAATTCA AATCAGCCCA GCCCATGAAA TTCCGTTTTG GCGACGAACC
GAGGCGATCA AACGGATCGA GCAGTTGCAA ATTGCCAGCT TGCGCCGCGA AGTACAGCAC
GAATGGGCCA CCGCCCGCGA ACATCTTGAA ACAGGCCAGC GCTTTGAAGG GCGGGCCTTT
TATGCCCCGT TTTTTCGCAC GCCCCACGAA GCAGCCGAGG CTGGGCTATG GCAACATTTG
CCAGCCTCAG CAATCATCCT GCTTTCCGAA GAGCATGAAT TGAATGCCCA AGGCATTGAA
TTGCAAAGCC ATGCCGATTT GGTGCGCAGC ACTCAAATTG AAAATAATGA ATTACCGCCC
GATTTTCCGT TTCCATTAAT CGCTTGGACG TTTATTCGGC GGTCGATTCA ACGCTGGAGT
TGCCTCAACC TCAGCAATCA GCCCATCGCC GATGATCAAA ACGATAGCTT TGTGCATGAA
ATTAATACAT TTAGCCAAGC TGCATCCTAT GGCGGCCAAA CTGATCGGCT GTTTGAGGAT
CTGCGCGAAC GCTTGGTTGG TGGCGAACGA GTGGTGTTGA TTTCACCACA GGCTAGTCGG
CTGCGCGAAT TGGCTAGCCA ACACAATTTA GCCCTAATTG GCGAAGAAGA CGGCCCCGAT
GTTGACGATC CGCCATTTCA AAGCGGCACG ATCATCATTC GCCATGGCAA TTTATCAGGT
GGGTTTAGCA GCGATCCATT GCGCTTAACG ATTTTAAGCG ATAGTGAGAT TTTTGGCTGG
CAGCAACGCC GAGCACTTTC AACTCGTGCC CGCAAACAGC GCACCGAAAG CGATCGCACG
GCCTTTTTGC AATCGCTCAA AGTTGGCGAT TATGTGGTGC ATATCGAGCA TGGCATCGCT
CAATACGAGG GTTTATCACG GATCGAGGCT AGCGGCGCTG AACGCGAGTT TTTGGTGCTG
CGCTACGCTT CGGGCGATAA ATTATATGTG CCGGTCGATC AGGTCGATCG GGTATCACGC
TATATCGGCG CAGGCGAAGG CAAGCCAACC CTCACCCGTT TGGGCACCTC AGATTGGGAG
CGTGCCAAGC GCAAAGTGCG GGCCGATGTT GAAGAACTCG CGACTGAATT GCTCGATTTA
TACGCAGCTC GTCAGTTAGT CGAGGGCTTT GCCTATAGCA GCGACACCTC GTGGCAACGC
GAACTCGAAG ATAGTTTTCC CTATACCGAG ACCGACGATC AACTGCGGGC AATCGAAGAA
GTCAAAAGCG ACATGGAAAA TACCCGCCCA ATGGATCGGC TGATCTGTGG CGATGTGGGC
TTTGGCAAAA CTGAAGTTGC CTTACGCGCC GCCTTCAAAG CGGTGCAAGA TGGCCGCCAA
GTTGCGGTGC TGGTACCAAC CACCGTCCTA GCCCAACAAC ATTTTGAAAC CTTCTCGCGG
CGCATGCAAA TGTTTCCGGT ACGGATCGAA ATGCTTTCAC GCTTTCGCTC AGCATCACAG
CAAAAATCAA TCACCGAACG GATCGTCAAG GGCGAAATTG ATATTGTGGT TGGCACGCAT
CGGATTTTAT CCAGCGATAT TCATTTTAAG CAACTCGGCT TGGTGATTAT CGACGAAGAA
CAACGCTTCG GCGTTAAAGA TAAAGAGCGA CTTAAAAAAT TGCGCCATGA AATTGATGTG
CTGACATTAA CTGCCACGCC GATTCCGCGC ACAATGCACA TGGCTTTGTC GGGTATTCGC
GATTTAAGCG TGATCGACAC ACCGCCCGAC GATCGCATGC CAATCAAAAC CTATGTGCAG
CCCTACAACG AAATGTTGGT ACGCGATGCG ATTTTGCGCG AATTAGGGCG TAATGGTCAA
GCCTATTTTG TGCATAATCG GGTGCAATCA ATTTATACTG TCGCCAATCG GCTGCAAAAA
CTCGTGCCCG AAGCCCGAAT CGGGGTTGGC CATGGCCAAA TGCCCGAAAA AGCGCTCGAA
AAAGTTATTT TGCAATTTTT CGAAGGCTTG TTTGATGTGT TTGTGTGTAC GACGATTATC
GAAAGCGGCA TCGACGTGCC CAGCGCCAAC ACCATGATTA TTGATGATGC AACAACCTAT
GGACTAGCCC AACTCTATCA ATTGCGGGGG CGAGTTGGTC GCTCAACCCA GCGCGGTTAT
GCCTATATGT TCTACAACCC CACCAAAGCC ATGGGCGAAG AAGCGCAAAA GCGGCTTGAG
GCGATTCAAG AGGCCACCGA ACTTGGGGCA GGCTTTCGCA TCGCCATGCG CGACCTAGAA
ATTCGTGGCA CTGGCAATTT GCTTGGAGCT GAACAATCGG GCAATATCAC CACGATTGGC
TTTGATCTCT ACTCGCGCTT GCTTTCGCAG GCAGTCGAGC GCGTGCGTGA AGAACGCAAA
CGCGGCCAAC AGCAAAAATC TGGCGAACAA AAAGCCCAAC GCGCTCGTGC AGTCGAGGCC
TTGCGCCGAG CAGCAGTGGT TTCAGCTCGC AGCAGTTTTA GCGGCGATGC CGATGATCCA
GTCTTGCCCG ATGCGATGGT CAGCATTGAT CTGCCGATTA ATGCCTACTT GCCGCAAAAT
TATGTTGACG ATGAACCGCT GCGTTTGCGC GTCTATCAAC ATATTGCCGA AGCACGTTCA
ACCCGCGATA TTCGTATGTT GCGCCAAGAA TTAGAAGATC GCTTTGGACC TGTGCCAGAG
CCAGCCGCCC GCCTGCTCGA TTTGCTGACA ATCAAAGTTT TAGCCTTACA AGCTGGCGTT
ATTTCGATCA TTTCTGATGA TAATGAAATT ACTGTGCGCT TGCCCAAGAG CGTCTATCTT
GATCGCGAGC AACTTCAGCG CGAATCACCA CGTGGCGTAG TAATTGGCCC GCAATTGGCG
CGGCTTGATC GGCGGGTATT GCGCGATGAT TGGGAAGTTG TGTTGCGGCA GTTGCTCGAA
GCACTCAACA AAATTGGCAA TTAA
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| Protein sequence | MTDHVDTLLA DIQALFASEP QLKAALAAAQ PNTTRTITPV PSAARRVVAA IATRQHRSSL
LIAATPDAAV RMHADLTAWL GENVMLFPPT DTLPYEHMSA DIGIVAQRLA VLGRLHASEP
ICVVASVKAL MQPTMTPEEF QFATRLLRQG DQHDPRKLLA HWVSLGYRVG PTAEQPGDLS
QRGGIIDIFP PTSDRPIRLE FWDDQLESLR IYDPISQRSD KRVRQIQISP AHEIPFWRRT
EAIKRIEQLQ IASLRREVQH EWATAREHLE TGQRFEGRAF YAPFFRTPHE AAEAGLWQHL
PASAIILLSE EHELNAQGIE LQSHADLVRS TQIENNELPP DFPFPLIAWT FIRRSIQRWS
CLNLSNQPIA DDQNDSFVHE INTFSQAASY GGQTDRLFED LRERLVGGER VVLISPQASR
LRELASQHNL ALIGEEDGPD VDDPPFQSGT IIIRHGNLSG GFSSDPLRLT ILSDSEIFGW
QQRRALSTRA RKQRTESDRT AFLQSLKVGD YVVHIEHGIA QYEGLSRIEA SGAEREFLVL
RYASGDKLYV PVDQVDRVSR YIGAGEGKPT LTRLGTSDWE RAKRKVRADV EELATELLDL
YAARQLVEGF AYSSDTSWQR ELEDSFPYTE TDDQLRAIEE VKSDMENTRP MDRLICGDVG
FGKTEVALRA AFKAVQDGRQ VAVLVPTTVL AQQHFETFSR RMQMFPVRIE MLSRFRSASQ
QKSITERIVK GEIDIVVGTH RILSSDIHFK QLGLVIIDEE QRFGVKDKER LKKLRHEIDV
LTLTATPIPR TMHMALSGIR DLSVIDTPPD DRMPIKTYVQ PYNEMLVRDA ILRELGRNGQ
AYFVHNRVQS IYTVANRLQK LVPEARIGVG HGQMPEKALE KVILQFFEGL FDVFVCTTII
ESGIDVPSAN TMIIDDATTY GLAQLYQLRG RVGRSTQRGY AYMFYNPTKA MGEEAQKRLE
AIQEATELGA GFRIAMRDLE IRGTGNLLGA EQSGNITTIG FDLYSRLLSQ AVERVREERK
RGQQQKSGEQ KAQRARAVEA LRRAAVVSAR SSFSGDADDP VLPDAMVSID LPINAYLPQN
YVDDEPLRLR VYQHIAEARS TRDIRMLRQE LEDRFGPVPE PAARLLDLLT IKVLALQAGV
ISIISDDNEI TVRLPKSVYL DREQLQRESP RGVVIGPQLA RLDRRVLRDD WEVVLRQLLE
ALNKIGN
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