Gene Haur_2496 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHaur_2496 
Symbol 
ID5734377 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameHerpetosiphon aurantiacus ATCC 23779 
KingdomBacteria 
Replicon accessionNC_009972 
Strand- 
Start bp3191325 
End bp3191858 
Gene Length534 bp 
Protein Length177 aa 
Translation table11 
GC content50% 
IMG OID641279636 
ProductECF subfamily RNA polymerase sigma-24 factor 
Protein accessionYP_001545262 
Protein GI159899015 
COG category[K] Transcription 
COG ID[COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.420633 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATTATTC CATATGTACA TACAACTGAA CGTGAGACGG CAGTTACGCA AGTAATTAGC 
CAATGGTTTG ATGACCATCA CGATGCCATG TTTCGCTACC TGACGCGAAT TGTGGGGCAG 
CCGGAACAAG CAGCCGATTT GGTACAAGAA ACCTTCCTCC GCGCGATGAA GGTGCTTGAC 
CCAACGCTCT TGCCTGCTAT TCCCCAAGCT TGGCTCTTTC GGATCGCCAG CAACCTTGCA 
TTAGATCATC TGCGTCGGCA GCGGCGTTGG AGTTGGTTTA TGCGCAGCTG GCAACCAGAA 
ACCAACAATT TTGATCAGCA TGTCGAAACA ACCCAAGCAA TTCGTGGCTG CTTAGCCAAA 
CTCAAGCCGC AAGATGCTGA AGTTCTGTTG ATGGTGCACT ACGCTGGTTG TAGCCCAGCC 
GAAGTCGCCA AATTAAATGG TGAAGAATTA GGCGCAGTCC GCAAACGATT ATCACGGGCC 
CGTGATCGTT TTCGGAATTT ATACGAGGAG GAACGTGGCC ATGAAGTGTC ATGA
 
Protein sequence
MIIPYVHTTE RETAVTQVIS QWFDDHHDAM FRYLTRIVGQ PEQAADLVQE TFLRAMKVLD 
PTLLPAIPQA WLFRIASNLA LDHLRRQRRW SWFMRSWQPE TNNFDQHVET TQAIRGCLAK 
LKPQDAEVLL MVHYAGCSPA EVAKLNGEEL GAVRKRLSRA RDRFRNLYEE ERGHEVS