Gene Haur_2483 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHaur_2483 
Symbol 
ID5734364 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameHerpetosiphon aurantiacus ATCC 23779 
KingdomBacteria 
Replicon accessionNC_009972 
Strand+ 
Start bp3175004 
End bp3176023 
Gene Length1020 bp 
Protein Length339 aa 
Translation table11 
GC content50% 
IMG OID641279623 
ProductCRISPR-associated Cas1 family protein 
Protein accessionYP_001545249 
Protein GI159899002 
COG category[L] Replication, recombination and repair 
COG ID[COG1518] Uncharacterized protein predicted to be involved in DNA repair 
TIGRFAM ID[TIGR00287] CRISPR-associated endonuclease Cas1 


Plasmid Coverage information

Num covering plasmid clones6 
Plasmid unclonability p-value0.0190242 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCAACGC TTTATGTTCT CGAACAAGGT GCAGAAATTC GCTGTGACGG TGAACGGCTA 
GCAATTTGGC AAACTGATCA AGAGCTGGGC AATGTGCCAA TGGCCAAACT TGAAGATATT 
GTAGTGATGG GCAATATTGG GTTTAGCACG CCTGCGATCA AGCGCCTGTT GGATCAACAG 
ATCGAAGTAA CATTTTTGAC GATTCACGGG CGCTACCATG GGCGCTTGAT TGGCGAAGCG 
ACCGCCCATG TGGCCTTGCG TCGCAACCAA TATCGCCGAG CAGATGATGA GGTTTGGGCT 
TTGGCGATGG CTCAAGCCTG TGTTAGCGGC AAATTACGCA ATTGCCGTGC TGTATTGCAA 
CGCTTCGCCC GCAACCGCCA ACAGGTCGAA AAAGAGGTTT TGGAATCGAT TGAAGCCTTA 
GACCATTTTA TTGATCGGGT TGATCGCACC ACCAAAATCA GCTCATTGGT TGGGGTTGAA 
GGTAGTGGCT CGGCAGCCTA TTTTGGTGGT TTACGCGGCC TCTTTGATAG CGAATGGATG 
TTCAATAATC GTAATCGCCG CCCACCAACC GACCCAGTTA ATGTATTATT ATCGTTGGGC 
TATACCCTTT TGGTGCATAA AACCCTTGGC GCAGTTCAGG CGGTAGGGTT CGATCCTTAT 
CAAGGATTTT TACATCAACT CGATTACAAT CGACCATCGT TAGTGCTTGA TTTGATCGAA 
GAATTTCGGC CAATTTTGGT TGATGCTTTG GTGATTCGCT GCTGTAATGA TGGCAGGCTG 
ACGGCCAATG ATTTCAGCCC GAGCGACGAT CCCAAGCACC CGATTTTACT CAGCAATGAG 
GGCAAAAAAC GCTTTGTAGT GGCCTTTGAA GAACGCATGC GCACCGAAGT AACCCATCCC 
GATGGCGCAG ACGGACGGCC TGGCAAAGTC AGTTATTGGC GTTGTATCGA GCTTCAAGCC 
CGCTTATTGG CCCGCGCAAT CCAGACTGGC ACAAGCTATC AAGCTTGGAC AACCCGTTAG
 
Protein sequence
MATLYVLEQG AEIRCDGERL AIWQTDQELG NVPMAKLEDI VVMGNIGFST PAIKRLLDQQ 
IEVTFLTIHG RYHGRLIGEA TAHVALRRNQ YRRADDEVWA LAMAQACVSG KLRNCRAVLQ 
RFARNRQQVE KEVLESIEAL DHFIDRVDRT TKISSLVGVE GSGSAAYFGG LRGLFDSEWM 
FNNRNRRPPT DPVNVLLSLG YTLLVHKTLG AVQAVGFDPY QGFLHQLDYN RPSLVLDLIE 
EFRPILVDAL VIRCCNDGRL TANDFSPSDD PKHPILLSNE GKKRFVVAFE ERMRTEVTHP 
DGADGRPGKV SYWRCIELQA RLLARAIQTG TSYQAWTTR