| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Haur_2477 |
|---|
| Symbol | |
|---|
| ID | 5734358 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Herpetosiphon aurantiacus ATCC 23779 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009972 |
|---|
| Strand | + |
|---|
| Start bp | 3168307 |
|---|
| End bp | 3169074 |
|---|
| Gene Length | 768 bp |
|---|
| Protein Length | 255 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 641279617 |
|---|
| Product | CRISPR-associated RAMP Csm3 family protein |
|---|
| Protein accession | YP_001545243 |
|---|
| Protein GI | 159898996 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1337] Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily) |
|---|
| TIGRFAM ID | [TIGR02582] CRISPR-associated RAMP protein, Csm3 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCAGATC AAACACCTAA AATCAAAATT GTTGGTCGGA TTTTCGTCAA TTTTGAAATT
CATGCCTTAA CTGGCTTACA TATTGGCGGC GCAGCCGGAA CCTTGGCGAT TGGCAACGTC
GATAATCCAG TCATTCGTAA TCCCTTTAAC AGCGAACCTT ACGTGCCCGG CTCATCGTTG
CGCGGCAAAA TGCGCTCACA ATTAGAAAAA TTGTATGGCT TGGCCCAAAA TACTTCGATT
GGCCGCGATG TTTCAATTCA CTCGGCTAAA ACCCAAGCCG AATATGACAA CAGCCCAGTG
CTGCACATTT TTGGAATTCC TGCTAGTGAT TTTCTGACCG AGCCAATCCG CTTGATCGTG
CGCGATGCAG CCTTGAGCGA ACAAACTCGC GCTGCCTTCC GTGATGCCCG TACCGACTTG
CCCTACACCG AAGTTAAATG GGAAGCAGCG ATCGATCGCG TCACCTCAGC CGCCACACCG
CGTCAGCAAG AACGGGTTCC AGCGGGGGCA ATTTTCGACG GCGCGTTGAC CTTCACGCTC
TACAACGATC AAGATACCAA GCTGTTCAAT ACGGTTATTC GTGGGCTTGA GTTGGTCGAA
GAAGATTACT TGGGCGGCCA AGGTGCGCGT GGTAGCGGCC AAGTTGCCTT CAAAAATATC
ATGATTCGCT TTCAGCAGCA CGAAAAGCCT GTGCTCGAAA AAGGCGAAAT TGGTTCGTTG
GCCGAGCTAC GGGCTTTGTG GGCAGCTCAA GGCTACGCTG CCAAATAA
|
|---|
| Protein sequence | MSDQTPKIKI VGRIFVNFEI HALTGLHIGG AAGTLAIGNV DNPVIRNPFN SEPYVPGSSL
RGKMRSQLEK LYGLAQNTSI GRDVSIHSAK TQAEYDNSPV LHIFGIPASD FLTEPIRLIV
RDAALSEQTR AAFRDARTDL PYTEVKWEAA IDRVTSAATP RQQERVPAGA IFDGALTFTL
YNDQDTKLFN TVIRGLELVE EDYLGGQGAR GSGQVAFKNI MIRFQQHEKP VLEKGEIGSL
AELRALWAAQ GYAAK
|
|---|
| |