| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Haur_2397 |
|---|
| Symbol | |
|---|
| ID | 5734278 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Herpetosiphon aurantiacus ATCC 23779 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009972 |
|---|
| Strand | - |
|---|
| Start bp | 3053669 |
|---|
| End bp | 3055462 |
|---|
| Gene Length | 1794 bp |
|---|
| Protein Length | 597 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 641279538 |
|---|
| Product | extracellular solute-binding protein |
|---|
| Protein accession | YP_001545165 |
|---|
| Protein GI | 159898918 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGCTAC GGTTTCCTGC GTTGATGTTG CTGGTTATTA TCTTTACCAG CATGTTGGCC
GCATGTGGTG ATGCGTCAAC CCTCACACCA CAAGCAACTC AAGCACCAAG TACAACCGCC
CCAGCCGCTA CTGCAACAGA AGCTCCTGCC ACGGGCAGCA CCGATCCAAC CGCCGAACCA
ACTGCTGCTG CAACCACAGA TACCGGTTCC ACGAGCAGTG ATGGCAAACT ATTTTTGACG
GTTTCAGACC AACAACAATC AACTTGGGTG CGCAATTTCA ACCCATTTGC TAGTGATAAC
CGCTGGCCAA CTGCCGCCGG GATTTACGAG CCAATGTTTA TTTACAACAT TGCCACCGGT
AAAATCGAGC CATGGCTCGC CACCGAATGG GCTTGGAATA GCGATAACAC CGAGTTGACC
TTCACTATCC GCGATGGCGT GAAGTGGTCA GACGGCGAAG CATTTAGCTC AAAAGACGTT
GCCTACACGC TCAATTTGAT GAAAGAAAAC GAAAAGCTGC AAGGCAATGG CCGCGCTGCA
ATGCGTTTTG TTGATAGCGT CGCTGCCGAT GGCAATAAAG TTGTCGTGAA GTTCAGCGAA
GTTTCAACCA TCGCGCTGTA TGATATTGGC CATCAAATGA TTGTGCCAGA ACATATCTGG
AGCAAGATCG CTGATCCAGT GACCTTCACC AACGAAACTC CAGTTGCAAC CGGTCCATTC
ACCGAAATCA TCCGCTTCCA AGACCAAATC TGGGAACTTG GCAAGAATCC AAACTACTGG
CAAGCTGGCA AACCATATAT CGATGGTATT CGCCAACCAG CCTACCCCAG CAACGATGCC
GCCAACTTGG CAACGATCAA TGGCGAAAAC GACTTGGCTA GCAACTTCAT TCCTGATGTT
GAAAACACCT ATGTCGCCAA AGATCCTGAA AACAACCACT ACTGGTTCCC ACCAGTCAAT
GCGCCAGTGA TGTTGCTCTT GAACACCACC AAGGCTCCAT TCAACGATCC TAACGTGCGC
AAAGCGATCA GCATGGGCTT CGATCGCCAA CAAATTACTG AAATTGCTAC CTACAGCTAC
AACGGCCCTT CAGATGCAAC TGGTTTGCCT GAATCGTTTG CTGATTGGAA AAACCCTGAA
GCCGTTGCTG CTGGCGATTG GGTCAACTTT GATGTTGAAA AAGCCAATGC AATGTTGGAT
GCTGCTGGCC TGACCCGTGG CGCTGATGGG ATTCGCGTAT TGCCCGATGG CACGCCAATG
ACCTACGATA TCAACGTGGT TTCTGGCTGG ACCGACTGGG TGACCACCGA CCAAATCATT
GCTGAAAGCT TGAAAGAAAT CGGCATCAAC GCCACTACCC GTACCTACGA CTTTAGCGCT
TGGTTCGATA AAGTTCAAAA GGGCGAGTTT GATATGTCGA TTGGCTGGAG CAACAATGCC
CCAACCCCAC TCCAATTCTA TCGTGGCTTG ATGTCAGGTG AAACCGCCGA TACCCCAATT
GGCGAAGCCA ACGGCGACAA CTGGCACCGC TATGGTAATC CAAAGGTCGA TGAATTGTAC
TCACAATTTG TCAAAACCTC AGACCCAGCC GAACAAAAGA AAATCATGAA CGAAATTCAG
ATGATCTTTG TTCAAGAAGC CCCAGCTATC CCAATTATGC CAAACATCTA TTGGGGTGAA
TACAACACCA AACGCTTTAC CAACTTCCCG AACGAAGAAA ACCCCTATGT CTTGCTTTCA
TCGTTCGCCC AACCCGACCG CTTGATCCTC TTGACCAACA TCAAACCAAA ATAA
|
|---|
| Protein sequence | MKLRFPALML LVIIFTSMLA ACGDASTLTP QATQAPSTTA PAATATEAPA TGSTDPTAEP
TAAATTDTGS TSSDGKLFLT VSDQQQSTWV RNFNPFASDN RWPTAAGIYE PMFIYNIATG
KIEPWLATEW AWNSDNTELT FTIRDGVKWS DGEAFSSKDV AYTLNLMKEN EKLQGNGRAA
MRFVDSVAAD GNKVVVKFSE VSTIALYDIG HQMIVPEHIW SKIADPVTFT NETPVATGPF
TEIIRFQDQI WELGKNPNYW QAGKPYIDGI RQPAYPSNDA ANLATINGEN DLASNFIPDV
ENTYVAKDPE NNHYWFPPVN APVMLLLNTT KAPFNDPNVR KAISMGFDRQ QITEIATYSY
NGPSDATGLP ESFADWKNPE AVAAGDWVNF DVEKANAMLD AAGLTRGADG IRVLPDGTPM
TYDINVVSGW TDWVTTDQII AESLKEIGIN ATTRTYDFSA WFDKVQKGEF DMSIGWSNNA
PTPLQFYRGL MSGETADTPI GEANGDNWHR YGNPKVDELY SQFVKTSDPA EQKKIMNEIQ
MIFVQEAPAI PIMPNIYWGE YNTKRFTNFP NEENPYVLLS SFAQPDRLIL LTNIKPK
|
|---|
| |