| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Haur_1962 |
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| Symbol | |
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| ID | 5733851 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Herpetosiphon aurantiacus ATCC 23779 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009972 |
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| Strand | + |
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| Start bp | 2397262 |
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| End bp | 2398878 |
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| Gene Length | 1617 bp |
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| Protein Length | 538 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 641279106 |
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| Product | putative PAS/PAC sensor protein |
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| Protein accession | YP_001544733 |
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| Protein GI | 159898486 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG1366] Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00377] anti-anti-sigma factor |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.118262 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGGAAGCA ATCTGGATCA GGATGGGGCG CAACCACCTC GCGACGTTCA GCAGACGATT
GACAGCTTGC GGGCACAACT CTTAATCTAT GAACAAATTT TAGATACACT CCCCGATTTG
ATTTTATACA AAGGCCCAGG CTCGCATATT CGCTATGCCA ATCGCGCTTT TCGCGATTAC
TATGGCATGG ACAAGCAGCA GCTCCAAGAT GTGATCGATG CCGATTTCAA TCAGCCTGAT
TATACCCAGC AGTATATTCG TGATGATGCG CAGGTGTTTC AAACTGGTCA AACATTAGTG
ATCGAGTGCG AGCCAGTCAC CCATCATAGC GGTGATGTCC ATCTATTTGC GACCACCAAG
CATGCAATTC GCAGTCACGA GGGGGAAATC ATTGGCACGG TTGGCATCTC ACGCGATCTG
AGCACAACCA GCGAATCTGC GGCGGTGCGC ACTAATAACG AGATTCGTTT GCAGCGGATT
ATCGACAACG TGCCTGGCAT GGTCTATCAA TTATTGCTGA ATCCCGATAC AACCATCAGC
TTTCCATTTG TCAGCACAGG CAGTCGCGAT CTGTATGCCC ACGAGCCAGA AGCGATTATG
CATCAGGCCA ACATTGTGAC GGAGGCGATG CATCCTGCCG ACCGTAGCCG TTTTCAGGAA
GGAATGTTGG CTTCGGCCCA AAGCCTTACT GCTTGGCATT GGGAAGGCCG GATTGTGATC
AATGGCCACG AGCGTTGGTT GCAAAGCGCC TCGCGACCTA GCAAATTGGA TAATGGAGCC
ATTTTGTGGG ATGGTGTGTT GCTGGATATT ACCCAGCAAA AGCAAGCCGA AGCACTGTTA
ATCCGCTTTG ATAGTATTTT AAGCGCGACC CCTGATCTGG TAATGATTGC TGATGCTGCT
GGTCAGATCC AATATCTCAA TCCAGCCGCT CGCCACGTTA TCCAATCCGA ACCAACCACA
GCAGCTGAGC CATTAACGTG GCAACAGCTT TACCGCACCG CCCCCGACCA AGCTTGGATT
AGCCAAACCT TGCAGCATGC CCAAACCCAT GGCTCATGGA TGGGCGATTA TCATTTGCAA
ACGGCCCAAG GCAGCCAGCT GCCGCTGCAT TATCAAGTGT TGTGTCATTA TGATTATGAT
CAGCAGCCCA GCTTTTTTTC ATTGATCGCC CACGATATTC GCGATCAGCA ACAGGCTGAT
GCCGAACGTC AGCGCTTGCA CGAAGAAATT ATTCGGACTC AACAGCAAGC CTTGATTGAT
CTTTCAACTC CATTGATCCC AATTGCGGAT ACGGTTGTGT TGATGCCCTT GATTGGTAGC
GTTGATACGG CGCGGGCGCA GCGCTTGATG GAAACCTTGT TGGAAGGCGT GCATACTCAC
AAAGCCCAGA TGGCGATCGT TGATGTGACG GGTGTTCCGA TTATGGATAC CCAGGTGGCT
GGATTACTCA TTCGGGCCGC TACAAGTGTA CAATTGCTTG GTGCTCAGGT TATTATCACC
GGCATTCGCC CCGAGTTGGC CCAAACCCTC GTGACCTTGG GCATTGATTT CCGATCCATC
ATTACCCAAA GTAGTCTGCA ACAAGGCATT ACCTATGCAA TCCAATCACT AAAATAG
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| Protein sequence | MGSNLDQDGA QPPRDVQQTI DSLRAQLLIY EQILDTLPDL ILYKGPGSHI RYANRAFRDY
YGMDKQQLQD VIDADFNQPD YTQQYIRDDA QVFQTGQTLV IECEPVTHHS GDVHLFATTK
HAIRSHEGEI IGTVGISRDL STTSESAAVR TNNEIRLQRI IDNVPGMVYQ LLLNPDTTIS
FPFVSTGSRD LYAHEPEAIM HQANIVTEAM HPADRSRFQE GMLASAQSLT AWHWEGRIVI
NGHERWLQSA SRPSKLDNGA ILWDGVLLDI TQQKQAEALL IRFDSILSAT PDLVMIADAA
GQIQYLNPAA RHVIQSEPTT AAEPLTWQQL YRTAPDQAWI SQTLQHAQTH GSWMGDYHLQ
TAQGSQLPLH YQVLCHYDYD QQPSFFSLIA HDIRDQQQAD AERQRLHEEI IRTQQQALID
LSTPLIPIAD TVVLMPLIGS VDTARAQRLM ETLLEGVHTH KAQMAIVDVT GVPIMDTQVA
GLLIRAATSV QLLGAQVIIT GIRPELAQTL VTLGIDFRSI ITQSSLQQGI TYAIQSLK
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