| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Haur_1939 |
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| Symbol | |
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| ID | 5733828 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Herpetosiphon aurantiacus ATCC 23779 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009972 |
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| Strand | + |
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| Start bp | 2351786 |
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| End bp | 2352355 |
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| Gene Length | 570 bp |
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| Protein Length | 189 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 641279083 |
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| Product | LuxR family transcriptional regulator |
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| Protein accession | YP_001544710 |
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| Protein GI | 159898463 |
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| COG category | [K] Transcription |
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| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.00703325 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGATCTGA TTACGCGGGT TCGTGATGTG TTTACAGCGC CGCATCCGCT GGTAGACCCG
GCCAGCTTTG CCCAATTCTA TCAACAAACC CATGCTGTGG TTTTTCGCTA TGTGTATATG
TTGCATGGCC AGCCCAAGAG CGATGTTGAA GACTTCACCG CCGAAGCATT TGCGCGGGCT
TGGAAGCAGC GCCAGCGATT TAGTGGCGAC GATCAGGCCG CATTGGGTTG GATTATTACA
ATTGCGCGGC GGATTGTGAT CGACCAACAA CGGCGGGCTA CGAGTGCGAT GGGCCGACTG
TGGGCGCAAC TTGATCGCTC GCCACCGACT CCCGAACAAC AAGCCATTCA GCGTGAACGC
CAGCATTTGG CGCTTGAATT ATTGGCGCAT GTCTCGCTGA CCCAGCGTGA TCATCTGATC
ATGCGCTACT TTTTGGGCTG GCGGGTGCAG ACCATCGCCC AACACCTTGG TTGTTCCGAA
AACGCCGTAT CAGTGAGCAT CCACCGTGCC TTGCGAATTC TGCAAACCCA GTATGCAACT
TTAGCTGAGG AGCTTTTCAA TGACGCATAA
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| Protein sequence | MDLITRVRDV FTAPHPLVDP ASFAQFYQQT HAVVFRYVYM LHGQPKSDVE DFTAEAFARA
WKQRQRFSGD DQAALGWIIT IARRIVIDQQ RRATSAMGRL WAQLDRSPPT PEQQAIQRER
QHLALELLAH VSLTQRDHLI MRYFLGWRVQ TIAQHLGCSE NAVSVSIHRA LRILQTQYAT
LAEELFNDA
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