| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Haur_1416 |
|---|
| Symbol | |
|---|
| ID | 5733324 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Herpetosiphon aurantiacus ATCC 23779 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009972 |
|---|
| Strand | - |
|---|
| Start bp | 1633084 |
|---|
| End bp | 1633929 |
|---|
| Gene Length | 846 bp |
|---|
| Protein Length | 281 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 641278554 |
|---|
| Product | AraC family transcriptional regulator |
|---|
| Protein accession | YP_001544188 |
|---|
| Protein GI | 159897941 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG4977] Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.00434606 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCAAATA AACACCAGAT TGAGCATATT CAACTTGAGC ATAATGCCTT AGCGCCAATG
TTCATCGCCA AACTAGAGCC ACACCACATT CCCAACGTGG TTAATCTGCC ACATCGCCAT
AGTTTTCATG AGCTGTTATG GATCAAGGCT GGCACTGGGC GGCATTGGGT TGATCAGCAA
TCGTACCCAT TGCAAGCCCA CACTTTAGCC TTAGTGGCTC AAGGCCAAGT GCATGTTTTT
GAGCAGGCCG AGGCACTTAA TGGCTATTAT TTGCGCTATG ATCAGGCTTT TCTGCCCAAC
CAATCTGATG AGCAGCAACC AAGCTTTCGA GCCAATGGCG GGCTACAACT GAGTGCTGCC
GATAGCAAAA TTATTGATAG TTTATTTGAA TTATTGGCCC ACGAATATCA ACGTGAAGAT
TGTTTAGCCA AATACCACAG CCTACGCCAT TTGCTGCTGA CCCTACTTTG GCAAAGCCAA
CGGCTGAGCC AAGCAGCCGA TCAACCACCA CAATCAGCCA ATTATGCCAT CTATCGCCAA
TTTTTGGCGC TGCTCGAACA AGCATTTCAG CAGCATCACG ACATTCACTA TTATGCCGAT
CAGCTTAATC TGAGCAAAAC ACAATTGGCT CAAATTATTA GCCAGCACAG TGGCCAACCA
CCAAAACGCA TCATTCTCAA ACGAATTTTG CTCGAAGCAC AACGTTATTT GCAATTCACC
ACCATGCCAA TTCAACAATT AGCCCAAAGC CTCGGCTTTC ATGATCCCTT CCATTTCAGC
AAATTTTTCA AGCAAGAGCT AGGCATTTCG CCGCGCCGTT ATCGCGAACA AAGCTTCAAA
AAATGA
|
|---|
| Protein sequence | MSNKHQIEHI QLEHNALAPM FIAKLEPHHI PNVVNLPHRH SFHELLWIKA GTGRHWVDQQ
SYPLQAHTLA LVAQGQVHVF EQAEALNGYY LRYDQAFLPN QSDEQQPSFR ANGGLQLSAA
DSKIIDSLFE LLAHEYQRED CLAKYHSLRH LLLTLLWQSQ RLSQAADQPP QSANYAIYRQ
FLALLEQAFQ QHHDIHYYAD QLNLSKTQLA QIISQHSGQP PKRIILKRIL LEAQRYLQFT
TMPIQQLAQS LGFHDPFHFS KFFKQELGIS PRRYREQSFK K
|
|---|
| |