| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Haur_1307 |
|---|
| Symbol | radC |
|---|
| ID | 5733200 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Herpetosiphon aurantiacus ATCC 23779 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009972 |
|---|
| Strand | - |
|---|
| Start bp | 1517896 |
|---|
| End bp | 1518591 |
|---|
| Gene Length | 696 bp |
|---|
| Protein Length | 231 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 641278447 |
|---|
| Product | DNA repair protein RadC |
|---|
| Protein accession | YP_001544083 |
|---|
| Protein GI | 159897836 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG2003] DNA repair proteins |
|---|
| TIGRFAM ID | [TIGR00608] DNA repair protein radc |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.00169173 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCAACT ATTTTATTTC AGTTAAAGAA TTACCTACCA GCGAACAGCC GCGTGAACGC
CTGCGCGACT TTGGGCCACA AGCGCTGTCT GATGCTGAGA TTTTGGCGAT TTTGCTACGG
GTTGGCGTGC AAGGAATGAA TGTGATTCAG CTAGCCCAAT TATTGCTGCG CGAGCATGGC
GGCTGGCATG GCCTGCAAAA AATCGAATTC AACGATTTAT GTCGAGTACG TGGCATGGGC
GAGGCCAAGG CTGCGCATAT CAAAGCAGCT CTTGAAATTG GGCGGCGCTT GTTGCTGGCA
GCGCCCAATC AGCCCTTGCA AATCACCTCG CCAGCCGATG TGGTGGGATT ATTGCAAGTT
GAAATGAGCC ATCTGGATAA GGAGCATCTG CGGGTAGTGA TTCTCAACAC CAAAAACCAT
GTGCTCAAAA TTGAAAACGT GACAATTGGC TCGTTAAATA GCGCTAGCGT GCGGATTGCC
GAGGTCTTTC GTGAGCCAAT TCGCCTGAAT GCGGCGGCAA TTATTGTGGT GCATAATCAC
CCGAGCGGCG ACCCAACGCC CTCGCCCGAC GATATTTTGG TCACCAAGCA ACTGATTCAG
GCTGGCCAAC TGCTCGATAT CGACGTGCTT GACCATTTGG TGATCGGTCA AGCACGTTGG
GTCAGCATGC GCGAACGGCG GTTGGCATGG TTATAA
|
|---|
| Protein sequence | MSNYFISVKE LPTSEQPRER LRDFGPQALS DAEILAILLR VGVQGMNVIQ LAQLLLREHG
GWHGLQKIEF NDLCRVRGMG EAKAAHIKAA LEIGRRLLLA APNQPLQITS PADVVGLLQV
EMSHLDKEHL RVVILNTKNH VLKIENVTIG SLNSASVRIA EVFREPIRLN AAAIIVVHNH
PSGDPTPSPD DILVTKQLIQ AGQLLDIDVL DHLVIGQARW VSMRERRLAW L
|
|---|
| |