| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Haur_1225 |
|---|
| Symbol | |
|---|
| ID | 5733118 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Herpetosiphon aurantiacus ATCC 23779 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009972 |
|---|
| Strand | + |
|---|
| Start bp | 1417675 |
|---|
| End bp | 1418673 |
|---|
| Gene Length | 999 bp |
|---|
| Protein Length | 332 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 641278365 |
|---|
| Product | binding-protein-dependent transport systems inner membrane component |
|---|
| Protein accession | YP_001544001 |
|---|
| Protein GI | 159897754 |
|---|
| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1173] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCAACCG CATCGAATGT GGCAGGCAAA AGCCCTGCCC AGGCTCAAGA ATTTACGCGG
CCTGTTCGGA GTCTTTGGAG CGATGCTTGG TTACGTCTGC GGCGCAATCG TTTAGCAATG
GCAAGTATTG TCTATTTGTT TTTGCTGGCG TTGGTAGCAA TTTTCGCACC AGTCATTGCC
CCGCACTCGC CTAGCCGCCC AACCTCAACC GAATTACGCG AACGAGGCAC CTATCGGCAA
GCTGCTTGGA TTGTTGATGA GAAAAACCCT AAACGCAGTG GGGTTTGGAA ATTTCCCTTA
GGAACAGATT CTGCTGGCGG CGATGTGCTC AGTCGCTTAA TCTATGGAAC GCGGGTTTCG
ATGGTTGTGG GCTTCATTCC CATGATCTTT ACCCTGACGA TCGGGATCAC GATTGGCTTG
GTTTCAGGTT TTGCCGGTGG CAAACTCGAT AGTTTGCTCA TGCGGTTTAC TGATATTGTC
TTTTCGCTGC CCGATATCTT GTTCTTTATT ATTGTGCAAA CGGCCTTCAG TCAAACCGCC
TTTGGCAAGA CCTTCAATGG TTTATTGTTG ATTTTCTTAT CATTCTCAGC GGTCAACTGG
GCTAGCGTTG CGCGTTTGGT GCGTGGCCAA GTGCTTTCTT TAAAAGAAAA AGAGTTTGTT
GAAGCAGCAG AGGCGATTGG GGTTCGGCGT GGCTCAATTT TATTTCGCCA TATTTTGCCC
AACACGCTCG CCCCAATTAT TGTGGCAGGT GCGTTTATTG TGCCAAGCGC GATTGTCACC
GAAGCAACCC TGAGCTTTTT GGGGATTGGC ATCCAGCCTG ATACCAACCC CAATAATCCG
TTCCCTACCA GCTGGGGCCA GATGATTTTG GAAGGTAAGT CGGCGATTGA TTCGCAACCA
TGGATTCTGA TCGCGTCGGC GATTGCAATT GCTTCAATTA CGATTGCTTT TGTGGCTTTG
GGCGATGGTT TACGTGATGC GCTTGATCCC CGCCAATAG
|
|---|
| Protein sequence | MATASNVAGK SPAQAQEFTR PVRSLWSDAW LRLRRNRLAM ASIVYLFLLA LVAIFAPVIA
PHSPSRPTST ELRERGTYRQ AAWIVDEKNP KRSGVWKFPL GTDSAGGDVL SRLIYGTRVS
MVVGFIPMIF TLTIGITIGL VSGFAGGKLD SLLMRFTDIV FSLPDILFFI IVQTAFSQTA
FGKTFNGLLL IFLSFSAVNW ASVARLVRGQ VLSLKEKEFV EAAEAIGVRR GSILFRHILP
NTLAPIIVAG AFIVPSAIVT EATLSFLGIG IQPDTNPNNP FPTSWGQMIL EGKSAIDSQP
WILIASAIAI ASITIAFVAL GDGLRDALDP RQ
|
|---|
| |