Gene Haur_1224 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHaur_1224 
Symbol 
ID5733117 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameHerpetosiphon aurantiacus ATCC 23779 
KingdomBacteria 
Replicon accessionNC_009972 
Strand
Start bp1416654 
End bp1417661 
Gene Length1008 bp 
Protein Length335 aa 
Translation table11 
GC content47% 
IMG OID641278364 
Productbinding-protein-dependent transport systems inner membrane component 
Protein accessionYP_001544000 
Protein GI159897753 
COG category[E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism 
COG ID[COG0601] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGATTGGCT TTATAATTCG TCGCGTCTTG GCGATGATTC CGGTGTTGTT TCTCGTGGCA 
CTCATTACTT TTTTTATGAT GAAACAGGCC AAAGGTGGGC CATTTGATCA AGAAAAGGAA
GTTGCCCCGT CAACGATTGC CCTGCTGAAT CGCAAATTTG GTTTAGATAA ACCCGCTTGG
CTCAATTCGG CAGAATTTAG TAATCGCTTG AGTACCGAAG GTAACCCCTT TTTGGCGCTG
CGTGGCTTGT TCGATAGCCA ATTTGGCAAC TATCTGATCA ATGCCGTCCA AGGCGATTTA
GGCCCCACCT ATGCTTCGAA AGGCACCGAA ACAGTTCAAG ATAAAATCAA AGAAACGTTT
CCAATTTCGT TGCGCCTTGG CATGATTTCG TTGGCCTTTG CGCTGTTGGT GGGCTTTCCC
CTCGGCATTT TGGGGGCTTT GCGCCAAAAT ACGATCTTCG ATTACTTTAG CCTGATCATC
TCAACCATCG GCTTTTCGGT GCCAACCTTT GTAACTGGTT TGCTATTGCT GCTGGTTATG
AGCAAGGTGT TTGATGTTGC TCCGATCAAA GATCCCTCGG TTTGGCAAGG CTTTAGTACC
TCGTATATTC CACCAGCAAT CATTTTGGGC TTAGGCACAA TGGCTTATAT TACTCGTTTG
ACCCGCAGTA GTGTGCTTGA GGTCAAGCGT CAAGATTATA TTCGCACTGC TCGGGCTAAA
GGTCTCGGTG ATCGTGTGGT GATTTTGCGC CATATCTTGC GCAATAGCTT GATTCCAGTA
ATTACGATTC TCGGTCCAGC AGTGGCGGGC TTGGTAACTG GCTCATTTAT TATCGAATCA
GTTTTCCGTG TGCCGGGCAT TGGCAGTGAA TTTATTGGAG CAATTGGCAG CCGCGATTAC
TCGATGATTA TGGGTTCAAC CCTGTTTTTC TCATTGCTGG TGGCTTTAGG CAATATTATG
GTCGATCTTT CGTATGGCTT GATTGATCCG CGGATTCGTA ACAGCTAG
 
Protein sequence
MIGFIIRRVL AMIPVLFLVA LITFFMMKQA KGGPFDQEKE VAPSTIALLN RKFGLDKPAW 
LNSAEFSNRL STEGNPFLAL RGLFDSQFGN YLINAVQGDL GPTYASKGTE TVQDKIKETF
PISLRLGMIS LAFALLVGFP LGILGALRQN TIFDYFSLII STIGFSVPTF VTGLLLLLVM
SKVFDVAPIK DPSVWQGFST SYIPPAIILG LGTMAYITRL TRSSVLEVKR QDYIRTARAK
GLGDRVVILR HILRNSLIPV ITILGPAVAG LVTGSFIIES VFRVPGIGSE FIGAIGSRDY
SMIMGSTLFF SLLVALGNIM VDLSYGLIDP RIRNS