| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Haur_1108 |
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| Symbol | |
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| ID | 5732999 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Herpetosiphon aurantiacus ATCC 23779 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009972 |
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| Strand | + |
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| Start bp | 1268834 |
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| End bp | 1270624 |
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| Gene Length | 1791 bp |
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| Protein Length | 596 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 641278246 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_001543884 |
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| Protein GI | 159897637 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.0147764 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGTGTTC AAATGCCCAA CGTCCGATTG CCCGATTCGG CTGCCCAAGC GGCCATGTTG
CCAACCGAAT GGTTATTAAT CGGCTTAGTT TGCGGGCTGG GAATCTGGTT GTGCTGGCGT
TGGCAGCGCC GCCGCACCGC TCAGCGCATT AGCACCCAAT TAGGCTTGTG GCACTGGCCG
CACAGTCAAC AAACGGTGAT TATCGATCAG CATGCGACGA TTATTGCAAT CAGCCCGCTG
CTGAATCAAC AGCTTGGCTA TCCAGCCCTC AGCCTCAACG GTCAATCATT CAAGCACCTC
CTGCATCCTG ATTCATCCAA CTATTTTGAA CAACTGCTGC ATACCCAAAC TACCCAAATT
CACTGGCAAA TGCTGCGCTG TCGCCATGCT GATGGCTCGT GGCGTGGGCT GGAGTTTTGT
CGGCATCAAG TTGGCCGCTA TTGGCTACTC AATTGCCGTG AAACTGAGCC TGTTGTAACT
GCGCAACGAA CACCGCCTGC CTGCGATTGG CTGACGGGCT TGCCCAATCG CCAGAGCTTG
GTTATTCAAC TACAACGCTT GATCGCCCAG CGCCAACTCG ATCAACAACA CTTTGCCGTC
TTGTTTGTTG AAGTTGATCG ATTTAGTGCG ATTAACGATG CCTTGGGCTA CGATGTTGGC
GATCAAGTGC TGCAAACGAT CGCCCAACGC CTCCAATCAA CGCTTGGCCC CAATGATTTA
GCTGCCCGTT TAGGTGGCGA TGAATTTGTG GTTGTGCTTG GCCACGTGCA ACATGCGCAA
CAAGCGCTTG AGCATGCTCA ACGAATTCAA GAGCAATTTA GCCAGCCAAT TGTGCTACGC
GATAAGCCAA TTTATACCAC CCTCGGCATT GGTGTGACGC TCGGCGATGG CCAATCCCAG
GCTGAAACTT TGCTGCGTGA GGCTGATACG GCCATGTATC AAGCCAAAAC CAATGGCATT
AGCCAAATCT TTTTGTTTGA TCGTGCGTTG CATGCGGCGC TGGCTGAGCG TTGGCAACTG
GAAATTGATT TGCGCGGAGC TTTAGAGCGC CATGAATTAA TTTTGCATTA TCAGCCAATT
ACGGCACTGC CTACCGGCCA GATGGTTGGG GTTGAGGCTT TGTTGCGCTG GCATCACCCG
CAGCGCGGCA TGATTCTGCC CAACGAGTTT ATTCATTTGG CCGAGGAAAG TGGCTTAATT
GTGCCAATTG GTTTTTGGGC TTTAGAAACT GCCTGCCTAC AATTTTTGGC TTGGCAAGCT
GATTATTCGC GGCCCCGCTT ACAAGTGCTT TCGGTCAATC TCTCGGCGCG TCAATTGGCC
AGCCCAGCCT TAGTTCAAAC CTTGGGCGAG ATTATTCAGC GCACTGGAAT CAATCCGGCT
CAGTTGGAGC TAGAAATTAC CGAAAGTATG GTGATTCATG GCTTTGAATT GGCGCGGGCA
CAGTTGGGCG CAATCAAAAA TTTGGGGGTA AAGCTGGCGA TTGATGATTT TGGCACAGGG
TATTCATCAT TAAGCTATTT GCACCACTTC CCCTTGGATA CGCTCAAAGT TGATCGCTCA
TTCGTCAATG CCATGAGCGA TGGCAGCCGC AACGTCGAAA TTGTGCGGGC AATTATCATG
CTCTCGCAGC AATTGGCCAT GAATGTAATT GCTGAGGGCA TCGAAACAAT TGAAGAAGCG
GCGACCTTGC GCGATTTGGG CTGTGATTAT GGTCAGGGCT ATCATTTTAG CCGCCCCATG
ACAGCGCCCG ATATTACCTC GTGGCTGCAT AGCCAACCGT TGAGTCTTTG A
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| Protein sequence | MSVQMPNVRL PDSAAQAAML PTEWLLIGLV CGLGIWLCWR WQRRRTAQRI STQLGLWHWP
HSQQTVIIDQ HATIIAISPL LNQQLGYPAL SLNGQSFKHL LHPDSSNYFE QLLHTQTTQI
HWQMLRCRHA DGSWRGLEFC RHQVGRYWLL NCRETEPVVT AQRTPPACDW LTGLPNRQSL
VIQLQRLIAQ RQLDQQHFAV LFVEVDRFSA INDALGYDVG DQVLQTIAQR LQSTLGPNDL
AARLGGDEFV VVLGHVQHAQ QALEHAQRIQ EQFSQPIVLR DKPIYTTLGI GVTLGDGQSQ
AETLLREADT AMYQAKTNGI SQIFLFDRAL HAALAERWQL EIDLRGALER HELILHYQPI
TALPTGQMVG VEALLRWHHP QRGMILPNEF IHLAEESGLI VPIGFWALET ACLQFLAWQA
DYSRPRLQVL SVNLSARQLA SPALVQTLGE IIQRTGINPA QLELEITESM VIHGFELARA
QLGAIKNLGV KLAIDDFGTG YSSLSYLHHF PLDTLKVDRS FVNAMSDGSR NVEIVRAIIM
LSQQLAMNVI AEGIETIEEA ATLRDLGCDY GQGYHFSRPM TAPDITSWLH SQPLSL
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