Gene Haur_1098 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHaur_1098 
Symbol 
ID5732989 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameHerpetosiphon aurantiacus ATCC 23779 
KingdomBacteria 
Replicon accessionNC_009972 
Strand
Start bp1257638 
End bp1259182 
Gene Length1545 bp 
Protein Length514 aa 
Translation table11 
GC content48% 
IMG OID641278236 
Productanti-sigma-factor antagonist 
Protein accessionYP_001543874 
Protein GI159897627 
COG category[T] Signal transduction mechanisms 
COG ID[COG3322] Predicted periplasmic ligand-binding sensor domain 
TIGRFAM ID[TIGR00377] anti-anti-sigma factor 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.64226 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAGTAG CCTATCAACA ATATGTGCAT AAAAGTGTTC GTGGCAAAAT TAGCCTTGCC 
TTATTGGGCA TTATGCTGAT TGTTGTGCTG GTTTTGTTGA TTCCGCTGCG CTATATTGTC
AATAGCTCAA GCCTTTTTGC TGAACAACAG GAAATGCAAG ATCACCTTGA ACGGGTACGA
CGAGCAATTA ATAGTGAGCT TGCCCAGATC GATGCCTTGG TCTTGTCGAT GGCAACCTGG
GATGAATCAT ACGATTTTAT CAATCAACGT ACTCCCACCT ATATTGAAGA AAATACCAAT
AACGAGATTT TTGAGCTGTA TAACGTTCAG GCGATGCTCT ATACCGATCA GAACGGCACA
ATTGTGTTCG CCAAAACCTA TGACTCGCAA CAACGGAAGT CGGTGGCAGT GCCATTTGAG
TTTTTTGATA TCAACAATTT CTATCCCCAA TTACTCAATC ATCCGCAGCT TGATCAAGGT
ACAACTAGCG TGGTGCGGGC TGGCACCAAA CTATGGCTTT TGGCGGCACG ACCAATTCTC
ACCAGCGATG CTCAAGGTCC ATCGCGTGGT ACGTTGATTT ATGGTCGGAT GGTCGATCAA
GCGGTGGTTG ATCGGATTAA TTACCAAACC TTGTTACCAG TTGAGTTGAG TGATTATCGC
TTGCTTGCGC CAACACGGCA GCAGGTTGTC AGCGAATTAG CCAATGAGCA GCGCTTAGTT
TCGCGAGCTT TCAACGACGA TACCCTCGAA GGCTTTGTGG TTTTTCCGTC AATCGACGGT
AAACCTTTGT TGGTTGCAAC GTTGGCCTTG CCCCGTACAA TTTATATTCA AGGTGAACGC
ACCTTCTGGT TAATTGCTAG TGTGGTGGGG ATTGCTGGCT GCTTGGGGTT GTTGAGCCTC
TTTTGGGCTT TGCGACGCTT TATTTTCTAT CCGCTAACGT CGATGGTGGG CGATTTGCGC
CAGATCGATC CCAATCAGCC TGAGCAACAT CAGATTAATT TTGCTAGCCC CGACGAGCTA
GGCTTATTGG CTAAAACCGT CAATCAAGCG CTTGATTCGT TGGCTGTCGC CCAGCGCGAA
CAACTGGCGG CTGAGGCCAA ACGTAGCGCC TTGCAAGCCG AAATGCTGCA AAATCAACAA
AGCCAATTGC AAACCCAAGC GGCTTTGCTC GAACTCCAAG AGCAAAGTTT GGCCGAACAA
GCCTTGCCGT TGATTCCAGT TTCGCGTGAG GTTTTGGCAA TGCCCTTGAT CGGCCAAATC
GATTTCAATC GGGCTGAGCG TTTGCAAACC ACGATTTTGC ATGGAATTGA AACCTATCGT
GCTCGCACGG TTATCCTCGA TCTGACTGGG ATTTCGCAGC TTGAGCAACG GGCAGCGGTT
GCGCTCGGCC AAACGGCCCA AGCCGTGCAA TTGCTTGGGG CACGCTTGTT GCTGACTGGG
GCAAACCCAT CAATTGCTGA AGAAATTGTT GCTGCCAATA TCGATTTGGG CCAAATTGCG
ATCTATCAAA CCTTGGCTGC TGGTATGCAA GCGGCTCTCC GCTAA
 
Protein sequence
MKVAYQQYVH KSVRGKISLA LLGIMLIVVL VLLIPLRYIV NSSSLFAEQQ EMQDHLERVR 
RAINSELAQI DALVLSMATW DESYDFINQR TPTYIEENTN NEIFELYNVQ AMLYTDQNGT
IVFAKTYDSQ QRKSVAVPFE FFDINNFYPQ LLNHPQLDQG TTSVVRAGTK LWLLAARPIL
TSDAQGPSRG TLIYGRMVDQ AVVDRINYQT LLPVELSDYR LLAPTRQQVV SELANEQRLV
SRAFNDDTLE GFVVFPSIDG KPLLVATLAL PRTIYIQGER TFWLIASVVG IAGCLGLLSL
FWALRRFIFY PLTSMVGDLR QIDPNQPEQH QINFASPDEL GLLAKTVNQA LDSLAVAQRE
QLAAEAKRSA LQAEMLQNQQ SQLQTQAALL ELQEQSLAEQ ALPLIPVSRE VLAMPLIGQI
DFNRAERLQT TILHGIETYR ARTVILDLTG ISQLEQRAAV ALGQTAQAVQ LLGARLLLTG
ANPSIAEEIV AANIDLGQIA IYQTLAAGMQ AALR