Gene Haur_0955 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHaur_0955 
Symbol 
ID5732841 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameHerpetosiphon aurantiacus ATCC 23779 
KingdomBacteria 
Replicon accessionNC_009972 
Strand
Start bp1094708 
End bp1095559 
Gene Length852 bp 
Protein Length283 aa 
Translation table11 
GC content51% 
IMG OID641278087 
ProductECF subfamily RNA polymerase sigma-24 factor 
Protein accessionYP_001543731 
Protein GI159897484 
COG category[K] Transcription 
COG ID[COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02957] RNA polymerase sigma-70 factor, TIGR02957 family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0246581 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAACCATG TTGAGCTATT CGAAAGCTAT CGCGGCTACG TGTTTGGCAT TGCCTATCGC 
ATGCTTGGCA GCGTGATGGA TGCCGAAGAT TGTTTGCAAG AGACCTTTTT GCGCTGGCAA
AGCCATGCCG AGCAAGTTGA AAACCCACGG GCTTGGCTGG CAACCGTGGC AACGCGCTGG
TGCCTTGATC AGCTTAACAC GGCACGCCAT CAACGTGAGC AATACATCGG CGAATGGTTG
CCAGAACCAT TAATTATCGC CGCGCCTAGC AGTAACGTAG AACAACTCGA ATCGTTATCA
ACCGCATTTT TGGTGCTGCT TGAACGGCTT TCGCCAGCTG AACGCGCAGT TTTCTTGCTA
CACAAAGTTT TTGGCTACGA ATATAGCGAA ATTGCCGAGA TTGTGGGCAA AACTCCAGCG
GCCTGTCGCC AACTTGGCCA TCGGGCCGCC GACCATGTGG CCCAAGCTCG TCCACGCTTC
AAGGTTGAGC CAAGCGTGCA GCAACGGCTG AGCGAACAAT TTTTACAAAG TTGTGCAACT
GGCGATTTAA ATGGCTTGAT GAGTTTGCTT ACCGAGGATG TTGTATTGCG CAGCGATGGC
GGCGGCGTAG TCCAAGCAGC GCGGAACCCA ATTTATGGGC CGACGGCAGT TGGGCGTTTC
TTGCTCGGCG TATTGCCCAA ATTGCCTGCC AATAGCATAT TTGAGCCACG CCTGATCAAT
GGTCAAGCTG GGTTTGTAGC ACTGGTCGAT GGGCAGGCCA GCGGCACGTT AATCTTAGAT
ATGCTTGATC AACAGATTGC TGGGATTTAT ATTATGCTCA ACCCGCAAAA ATTACAGCAT
CTTAAGCCTT GA
 
Protein sequence
MNHVELFESY RGYVFGIAYR MLGSVMDAED CLQETFLRWQ SHAEQVENPR AWLATVATRW 
CLDQLNTARH QREQYIGEWL PEPLIIAAPS SNVEQLESLS TAFLVLLERL SPAERAVFLL
HKVFGYEYSE IAEIVGKTPA ACRQLGHRAA DHVAQARPRF KVEPSVQQRL SEQFLQSCAT
GDLNGLMSLL TEDVVLRSDG GGVVQAARNP IYGPTAVGRF LLGVLPKLPA NSIFEPRLIN
GQAGFVALVD GQASGTLILD MLDQQIAGIY IMLNPQKLQH LKP