| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Haur_0730 |
|---|
| Symbol | |
|---|
| ID | 5732616 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Herpetosiphon aurantiacus ATCC 23779 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009972 |
|---|
| Strand | + |
|---|
| Start bp | 839405 |
|---|
| End bp | 840961 |
|---|
| Gene Length | 1557 bp |
|---|
| Protein Length | 518 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 641277860 |
|---|
| Product | TPR repeat-containing protein |
|---|
| Protein accession | YP_001543506 |
|---|
| Protein GI | 159897259 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2956] Predicted N-acetylglucosaminyl transferase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.444597 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACTACCA ATGTTGACAC TTTGAATGTA ATGCCGCTGG ACCTCGATAC CTTTGCTGGG
AGCGAGCGTT TTATGGCTGG GACGCGCTTG GGTGCTGCGT TTGGGCGCGG GATCAAAGCC
TATTTGGCCG CCAATTATCC TGATGCAATC GAGCATTTCA AAACTGCATT AATCGCTGCC
TATGTTGAAG GCGATGAGAA ATCGCAAATC TACGATCGCG AGCGGGCGAT TATCTATCTG
TATATTGGCA ATGCCTGTGC TTTTCAAGAT GATTGGCCGA CGGCTCAGCG TGAGTATTTG
GAATCGGTAC AAACCGACCC GCAATTGGCC GAAGCCCACT ACAATTTGGG TGTTGCTTTC
GGCGCGATGC GCCAAATTGA TCGGGCAATT GGCGCATTCA AGGAAGCGCT TGAACATAAT
AATGGCTTGT ACGAGGCCCA TTTTGCACTT GGCCGTGCTT ATCAAATGCT CGATGATGCT
GGCCGCGCCT ATATTCACTT TACTTCAGCC CGTGAATTGC GGCCTTACGC TGGCGAGCCT
TTGTATTACA TGGGTTTGAT GCACCAAGCC CATGGTGCTC ACGAATTGGC ACAGCGCTGT
TTTGCCGAGG CGCTGCGAGT TGAGCCAACC TTTATCTCGC CTAGCGTTGG CCCCGATGAA
GTGCTGGTTA GCAAATCGGA GCAAGAGGTT GCCAATTGGT ACTATCGTTT GAGTGACGAC
CTTAAATCCC AAGGCTATGA TGAAGATGCC AAGCGGATTT ACGAGGCTTT GCTGAAATGG
CGACCAACCG AGCATCGTGC CCGCTATTTG TTGGGCAATT TGTTGGCGCG GGCGCGACGT
TGGGAATTGG CTTTGCAAGA ATATGGCCGA ATTCCACCGC AAGATCGCTA CTATGTTGAT
GCGCGACTGC GGATCAGTGC AATTTTGCGT TTTCAGGGCA AGCATCGCGA GGCCTATAAC
CATTTGTATA GTACCGCCAA GTTGCGGCCC AACGATGGTC AAGTGTTCTT GCAAATGGGC
AAATTGCTCT ATGATTTAGA GAAACATCAT GCTGCGATGC GTGCTTTTGA ACGCGCGGTC
CAACTTTTGC CCAAAGACCC TAATGCCTAC TATTTGTTAG GGTTTATGTA CACGGTGTTG
GGCCATGAAA GTTGGGCCTT GGCGGCTTGG CGCAAAGCAG TGGAGTTAGC GCCGCATGCC
CATTCATTGC GCTACGATTT GGGCTATATG TACACCCGCC GTCGCCGCTA CGATTTGGCT
TCGCGCGAAT TTAGCCATGT ACTGATGCAT TGGCCCGATG ATATTGAAAC CACCTTTATG
CTGGGCACAT GTTATAAAGA AATGTTAGAA CCAGCCCAAG CCATACCGTT ATTTGAAAAA
GTGCTGCGCC GCAACCCACG TCATACCCAA GCACTCTACT ATTTGGGGGC ATGCTATCTG
CAAGTTGGCA ACAGTTCTTT GGGTAAGGCC TACCTGCGCC GCTACGAACA TCTGATCAAC
CAACAGGAAC AATTACCACA AAAGGGCCGC GCAATGGCTC GTGGAGGTTC GCGATGA
|
|---|
| Protein sequence | MTTNVDTLNV MPLDLDTFAG SERFMAGTRL GAAFGRGIKA YLAANYPDAI EHFKTALIAA
YVEGDEKSQI YDRERAIIYL YIGNACAFQD DWPTAQREYL ESVQTDPQLA EAHYNLGVAF
GAMRQIDRAI GAFKEALEHN NGLYEAHFAL GRAYQMLDDA GRAYIHFTSA RELRPYAGEP
LYYMGLMHQA HGAHELAQRC FAEALRVEPT FISPSVGPDE VLVSKSEQEV ANWYYRLSDD
LKSQGYDEDA KRIYEALLKW RPTEHRARYL LGNLLARARR WELALQEYGR IPPQDRYYVD
ARLRISAILR FQGKHREAYN HLYSTAKLRP NDGQVFLQMG KLLYDLEKHH AAMRAFERAV
QLLPKDPNAY YLLGFMYTVL GHESWALAAW RKAVELAPHA HSLRYDLGYM YTRRRRYDLA
SREFSHVLMH WPDDIETTFM LGTCYKEMLE PAQAIPLFEK VLRRNPRHTQ ALYYLGACYL
QVGNSSLGKA YLRRYEHLIN QQEQLPQKGR AMARGGSR
|
|---|
| |