| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Haur_0492 |
|---|
| Symbol | |
|---|
| ID | 5732406 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Herpetosiphon aurantiacus ATCC 23779 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009972 |
|---|
| Strand | + |
|---|
| Start bp | 574177 |
|---|
| End bp | 575307 |
|---|
| Gene Length | 1131 bp |
|---|
| Protein Length | 376 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 641277618 |
|---|
| Product | peptidase M20 |
|---|
| Protein accession | YP_001543271 |
|---|
| Protein GI | 159897024 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0624] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.0471333 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCTCGTC AGCTTTTAAC CTATGTTGAT GCTTGCCTAC CCGATCTGCT GGATGAAATG
CGTCAATGGA TCGAAATTGA ATCGTTTACC CGTGATATTA CGGCGGTTTC TTGGATGGTC
AACGTGGTTG GCGAGCGTTT GAGTAAGCTT GGTGCAAGTG TGCGCAAATA TAATGGCAAG
CCCCAAGCCG ACCATTTGTT GGCAAGTTGG CCAGGCGAGG GCGAACCATT GCTAATTGTG
GGCCATGTTG ATACCGTTTA TCCGCCAGGC ACGATTGATC AATTTCCGTT CCGCATCGAT
GGCGATGTGG TGCGTGGGCC TGGAGTCAGC GATATGAAGG GCTGTATTTT GCTGACTTGC
GCCGCCTTGC AAGCCTTACG CCACTTTAGC CGCTGGACCA GCCGCCCCTT GAAATTTTTA
ATTACGACCG ATGAAGAGAT TGGTAGCCCA ACCTCCCGAC GGTATATTGA AGAACAGGCT
CGCGGTTGTC GCGCAGCCTT GATTATCGAA TCAGCAGAAG AGGGTGGTTG GCTCAAAACA
TGGCGCAAAA GTGTCAGTAT GTATGACTTA ACAATTACTG GCAAGCCCTC GCATGCGGGG
GTAGCCCCGG AGCTTGGCAT TAGCGCGATT CACGAATTAA GCTACCAAAT TGGCCAGATT
TTGCCCTTGG CGCGGCCTGA AATTGGCACA ACGATCAATA TTGGCAAAAT TAATGGTGGT
ACTGCCACCA ATGTTGTAGC CGCCGAGGCC CATTGCACGA TCGATGTGCG GGCATTAAAA
GTTGGCGAGG CGGAACGGGT TGATCAAGCG CTGCATCAAT TAGTGCCCCA TTTGGCTGGC
GCAAAATTAA CTTTAGAAGG TGGCGTAAAT CGCCCAGCCA TGGAACAAAC GCCTGCCACA
ATGGCATTAT ATGCTGCTGC CGAGCAAATT GCCAATCAAT TGGATTTGCC GATTAAAGCT
AGTGGCACTG GCGGCGGTTC GGATGGCAAT TTCACGTCGG CGATCGGTGT GCCAACCCTC
GATGGGCTTG GTGGCTGGGG CAGTGATTCG CATAGCTTCG ATGAATGGCT TTCGATCAGC
CAATTTGCCC CACGGGCTGC CTTGCTGGCT CGTTTGATTG AGACATTGTA G
|
|---|
| Protein sequence | MPRQLLTYVD ACLPDLLDEM RQWIEIESFT RDITAVSWMV NVVGERLSKL GASVRKYNGK
PQADHLLASW PGEGEPLLIV GHVDTVYPPG TIDQFPFRID GDVVRGPGVS DMKGCILLTC
AALQALRHFS RWTSRPLKFL ITTDEEIGSP TSRRYIEEQA RGCRAALIIE SAEEGGWLKT
WRKSVSMYDL TITGKPSHAG VAPELGISAI HELSYQIGQI LPLARPEIGT TINIGKINGG
TATNVVAAEA HCTIDVRALK VGEAERVDQA LHQLVPHLAG AKLTLEGGVN RPAMEQTPAT
MALYAAAEQI ANQLDLPIKA SGTGGGSDGN FTSAIGVPTL DGLGGWGSDS HSFDEWLSIS
QFAPRAALLA RLIETL
|
|---|
| |