| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Haur_0479 |
|---|
| Symbol | |
|---|
| ID | 5732378 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Herpetosiphon aurantiacus ATCC 23779 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009972 |
|---|
| Strand | + |
|---|
| Start bp | 557966 |
|---|
| End bp | 558841 |
|---|
| Gene Length | 876 bp |
|---|
| Protein Length | 291 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 641277605 |
|---|
| Product | tRNA pseudouridine synthase B |
|---|
| Protein accession | YP_001543258 |
|---|
| Protein GI | 159897011 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0130] Pseudouridine synthase |
|---|
| TIGRFAM ID | [TIGR00431] tRNA pseudouridine 55 synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTGCATG GATTTTTAAA CATTGATAAA CCTCAAGGCA TAACCTCGAC CGATGTGGTG
CGGGTGGTCA AACGTAATGC GCGTCAAAAA CGCGTTGGTC ATGGCGGCAC GCTTGATCCC
ATGGCAACGG GCGTGCTGCC GATTGCTTTG GGCAACGCCA CGCGCTTGCT CGAATATCTG
CTTGAGGAAG AGCGAAAAGC CTATACTGCA ACCCTTCGAC TGGGCATTAC CACTGATAGC
GATGATGTTG AGGGCGCAGT GATCGCCGAA GCACCGATTC CGCCACTTGA TCCAGCCTTG
ATTGAAAGCG TGCTCAGCCA ATTTCGCGGC GCGATCAACC AAGTTCCGCC GCAATATGCA
GCAATTCGCG TCGATGGTAA GCGCATGTAT GAATATGCCC GCGAAGGCAA GCATATCGAG
TTGCCCGCCC GCCCAATCAC CATTGAGCAA CTTGATCTCT TGGCATGGGA TGCCCAGCAA
TTAACGATTG CCGTTGATTG CAGCAAAGGC ACCTATATTC GAGCGATTGC CCGTGATATT
GGGGCATTGC TCGGTTGTGG TGCGCATTTA ACTGCCTTAC GCCGTACCCG CGCTGGAGCC
TTTGATCTGA GCAACAGCAT TGGCTTGGCC GAGCTTGATC AACAACCTGA GGTTTTTGCC
GCAGCTTTAT TGCCACCGCA GGCAGCAATT GCCAACTGGC CATTAATTAA TTTGGCTGAT
GCGATTGTGG CGGATGTGCG CATGGGTCGA GTTGTGCAGG TTGATAGCCA AGCCGAACGG
GTTGGGTTGC TCGATCAAGC AGGCCAATTG GTAGCGATTG CCGTATTGCG TGAAGCTGGC
TATCAGCCAA TCAAGGTCTT TGCCGCCGAG GAATAA
|
|---|
| Protein sequence | MLHGFLNIDK PQGITSTDVV RVVKRNARQK RVGHGGTLDP MATGVLPIAL GNATRLLEYL
LEEERKAYTA TLRLGITTDS DDVEGAVIAE APIPPLDPAL IESVLSQFRG AINQVPPQYA
AIRVDGKRMY EYAREGKHIE LPARPITIEQ LDLLAWDAQQ LTIAVDCSKG TYIRAIARDI
GALLGCGAHL TALRRTRAGA FDLSNSIGLA ELDQQPEVFA AALLPPQAAI ANWPLINLAD
AIVADVRMGR VVQVDSQAER VGLLDQAGQL VAIAVLREAG YQPIKVFAAE E
|
|---|
| |