| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Haur_0367 |
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| Symbol | |
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| ID | 5732218 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Herpetosiphon aurantiacus ATCC 23779 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009972 |
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| Strand | + |
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| Start bp | 439342 |
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| End bp | 440517 |
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| Gene Length | 1176 bp |
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| Protein Length | 391 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 641277490 |
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| Product | RpoD family RNA polymerase sigma factor |
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| Protein accession | YP_001543146 |
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| Protein GI | 159896899 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.000117749 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGTTTACCA GACGTAACGT AGTAGATTGC ATAGAGAATC CTGCGGGTTC AATAGATAGC
TTTCGTGCGC CGCCAGCAGC GAAAGCCATA GTGGGCGTAG CCCAGCGAGC GTGGACGATG
ACAAAGTATG AAACGATGAA TGTAGCAAAA AACCAACCGG AACTCGAAGA TGCCCCCGAG
GGCTGGGAGC TTGAGCCGGG TTTTAATGAT GAAGACGTAG AATTAGCAAT TGTAAACCTA
CGCCGCAAAA AAACGCTCTA TTCCGAGGCT GTCGAAGATT CAGTCCAGAT GTATTTGCGT
GAAATCGGCG AGGTTGAGTT GCTCACCGCC GAGGAAGAAA TTACGCTGGC CAAGCAAATT
GAAACTGGCC GCAAAGCGGA ACATCAGTTG CAAACCGAGC AGTATGCAAC CTGGGATGAA
CGTACCGCCC TCGAACGCCG CGTCGATTTT GGTAATGAAG GCCGTCGCAA GCTGACCCAA
GCCAATTTGC GCTTGGTCGT GAGCGTCGCC AAAAAATATA TTGGCAATCA CATGTCGTTC
ATGGATTTGA TCCAAGAAGG CAATATTGGT TTGATGCGGG CAGTTGAGAA GTTCGATTAT
CGCAAGGGTA ATCGCTTTTC AACCTATGCT ACGTGGTGGA TTCGCCAAGC AGTTACCCGT
GCGATCGCTG AGCAAAGCCG CACCATCCGC TTGCCAGTCC ACTTGAGCGA ATCAATCGCC
CAAATGCGCC GCGTCGCTTA CCAGCTTGAG CAAGCTTTGC AACGTGAAGC AACGCCCGAT
GAATTGGCTG ATGCCTTGGG TGTAAGTTTG CGCAAGGTCA AGCGTATGCT GAATGCTTCG
GTACAGCCAG TGTCGCTTGA GCAACCAATT GGCAAAGAAG GCCAAGGCCG CGTTGGCGAA
TTTTTGGCCG ACGATACCGA TGAAGCACCG CTTGAGCAGG CCACCCGCAT GATGTTGCAA
GATGAATTGG CCGATGCGCT CTCGCAATTG CCCGACCGCG AACGCCAAAT CTTGTTGTTG
CGCTATGGTT TGGCCGATGG CAAACGCCGC ACGCTCGAAG AAGTTGGCGC TGAATTCGGG
ATTACTCGCG AACGCACCCG CCAAATCGAG GCTGAAGCGA TGCGTCACTT GCGCCAACCC
AATGTTGGTC AACACTTGCG AGCTTACCTT GATTAA
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| Protein sequence | MFTRRNVVDC IENPAGSIDS FRAPPAAKAI VGVAQRAWTM TKYETMNVAK NQPELEDAPE
GWELEPGFND EDVELAIVNL RRKKTLYSEA VEDSVQMYLR EIGEVELLTA EEEITLAKQI
ETGRKAEHQL QTEQYATWDE RTALERRVDF GNEGRRKLTQ ANLRLVVSVA KKYIGNHMSF
MDLIQEGNIG LMRAVEKFDY RKGNRFSTYA TWWIRQAVTR AIAEQSRTIR LPVHLSESIA
QMRRVAYQLE QALQREATPD ELADALGVSL RKVKRMLNAS VQPVSLEQPI GKEGQGRVGE
FLADDTDEAP LEQATRMMLQ DELADALSQL PDRERQILLL RYGLADGKRR TLEEVGAEFG
ITRERTRQIE AEAMRHLRQP NVGQHLRAYL D
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