| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Haur_0337 |
|---|
| Symbol | |
|---|
| ID | 5732247 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Herpetosiphon aurantiacus ATCC 23779 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009972 |
|---|
| Strand | + |
|---|
| Start bp | 402597 |
|---|
| End bp | 404483 |
|---|
| Gene Length | 1887 bp |
|---|
| Protein Length | 628 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 641277461 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_001543117 |
|---|
| Protein GI | 159896870 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.939408 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATGGTG GAGGCTGGCG AGGGTTTGTT CGCGCCAATG AGGACGAACA ACCCACCATC
AGCCGCATGT TGTTGCAGCG CGTATGGGGT TATGCCAGAC CCTATCGCAG CGGCATCATT
GTGGTCTTAA TTACAATTTT CATCGGAACC TTGTTGGATC GGATTACACC GTTGTTGGTG
CGCCATTTGA TCGATGTGGC GATTCCAGAG CGCAATCTAG GGCGGCTGAA TCTTGTAGCC
GTCGGCTTGG TTGCAATTCC CTTGATCGGC GGTTTGCTGG ATATTTTGCA GCGTCGCCAT
TCATCGTTGG TTGGCGAGGG AATTATTTTT GATTTGCGGC GGGCCTTGTA TAGCCATATG
CAGCGCATGA GCTTGCGTTT TTTCACCAGC ACCAAATCGG GCGAGTTGGT TTCGCGGCTC
AATAACGATG TGGTTGGTTC GCAACGGGCG GTTACTGGCA CGCTGATCAC GTTAATCACG
AATGTCATTA CCGTTAGCAT CACGCTGTTT ATTATGTTGA CGATCGAATG GCGTTTAACC
TTGTTAGCCC TGCTGGTTTT GCCCTTGTTT ATGCTGCCAG CCCGCCGTGT TGGTCGCATT
GTGCGCAACT TGACCCGCTC GCAAATGCAG GCTAACGGCG AAATGAATGG CTTGATGGGC
GAAACCTTGA ATGTCAGCGG CGCGTTATTG GTCAAGATTT TTGGGCGGCG CAACGATGAA
GTCGCCAAAT TTAGCCAACA TGCTGGCGAA GTGCGCGACC TAGGCATTCG TACCGCCTTG
GTTATGCGCT CATTTTTTGT GATGGTTGGT TTGGTCAGCG CAGTTGGCGT AACCTCAGTT
TATTGGTTTG GCGGCTATCT CGCAATCACC TCGGATAATT TTAGCACTGG CGATATTATT
GCCTTAGCCT TATATTTGCC TGGTTTGTAT GGCGCAATTT CTACGTTGGT CAATACGCGA
GTCGAATTGG CTTCATCATT GGTTTCATTC GAGCGGGTGT TTGAAATTCT CGATTTACCG
CTAGAAATTG TTGATGCTGA GCAGCCTCAA ATACTGCAAA CTATTCGCGG CGAAGTGCAA
TTTGAGCATG TTTGGTTTCG CTATCAGGCC GATGAGATCA ATAGTCTCAG CTCGCGCGAT
GGTCAAGAAA CCACTGTTAT CAGTCCAATT ACAACCCGTG AATGGGCCTT GAGCGATATT
GATTTTACCG CTAAGCCAGG CCAATTAGTG GCATTGGTCG GGCCATCGGG CGCGGGCAAA
ACCAGCCTAA CCTACCTGTT GCCACGTTTA TACGACCCCA GTCGTGGCCG CGTGTTGATT
GATGGAATTG ATGTGCGCGA GTTGGAGCTT GATAGCCTTG GTCAAGCGAT TGGCATGGTC
ACCCAAGAAA CCTTTCTCTT TCACGAGAGC TTGCGGGCTA ATTTGCGCTA TGCCAAACCC
GATGCCACTG ATGCTGAATT AGAGGCCGCC TGTCGCGCTG CCAATATCCA CGATTTGATC
GCCAGCCTGC CCAATGGCTA TGATACGGTG GTTGGCGAAC GTGGTTATCG CTTCTCAGGT
GGCGAAAAAC AACGGATTGC GATCGCCCGT GTGATTCTCA AAAACCCGCG GATTTTGGTG
CTTGACGAGG CCACCTCGGC GCTCGATTCA CGCTCGGAAG CATTAATTCA GGCTGCACTC
CAACCATTGC TCAAAGATCG CACCAGCATT GTGATTGCCC ACCGACTTTC AACGATTCTG
GCGGCTGACT TGATTTTGGT CGTCGATCAA GGGCGGGTGC TCGAACGTGG CACACATAGC
GAGTTGCTAG CCCAAGCTGG TTTGTACGCC CAACTCTATC AAACCCAATT TAAGGAGCGG
GAACAAGCCT TAGAACAGAG AGCATAG
|
|---|
| Protein sequence | MNGGGWRGFV RANEDEQPTI SRMLLQRVWG YARPYRSGII VVLITIFIGT LLDRITPLLV
RHLIDVAIPE RNLGRLNLVA VGLVAIPLIG GLLDILQRRH SSLVGEGIIF DLRRALYSHM
QRMSLRFFTS TKSGELVSRL NNDVVGSQRA VTGTLITLIT NVITVSITLF IMLTIEWRLT
LLALLVLPLF MLPARRVGRI VRNLTRSQMQ ANGEMNGLMG ETLNVSGALL VKIFGRRNDE
VAKFSQHAGE VRDLGIRTAL VMRSFFVMVG LVSAVGVTSV YWFGGYLAIT SDNFSTGDII
ALALYLPGLY GAISTLVNTR VELASSLVSF ERVFEILDLP LEIVDAEQPQ ILQTIRGEVQ
FEHVWFRYQA DEINSLSSRD GQETTVISPI TTREWALSDI DFTAKPGQLV ALVGPSGAGK
TSLTYLLPRL YDPSRGRVLI DGIDVRELEL DSLGQAIGMV TQETFLFHES LRANLRYAKP
DATDAELEAA CRAANIHDLI ASLPNGYDTV VGERGYRFSG GEKQRIAIAR VILKNPRILV
LDEATSALDS RSEALIQAAL QPLLKDRTSI VIAHRLSTIL AADLILVVDQ GRVLERGTHS
ELLAQAGLYA QLYQTQFKER EQALEQRA
|
|---|
| |