| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Haur_0266 |
|---|
| Symbol | |
|---|
| ID | 5732161 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Herpetosiphon aurantiacus ATCC 23779 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009972 |
|---|
| Strand | - |
|---|
| Start bp | 313141 |
|---|
| End bp | 314760 |
|---|
| Gene Length | 1620 bp |
|---|
| Protein Length | 539 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 641277390 |
|---|
| Product | shikimate kinase., 3-dehydroquinate synthase |
|---|
| Protein accession | YP_001543046 |
|---|
| Protein GI | 159896799 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0337] 3-dehydroquinate synthetase
[COG0703] Shikimate kinase |
|---|
| TIGRFAM ID | [TIGR01357] 3-dehydroquinate synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAACCAT CTGGGCAATC GATTGCATTA ATTGGCCCAA GCGGCGCAGG CAAAAGTACG
GTTGGCGTAG GTTTAGCCCA AGCGCTCGGC TGGCGTTTTA TCGATTTAGA TCAACTGATT
ATCGAACGCG CTGAAAAAAG TATTAGCGAC ATTTTTAGCC AAGAGGGCGA AGCAGGCTTT
CGTGAGCGCG AAACCGCCGC TTTGGTCCAA GCACTACAAA CAGATCAAGC CGTCATCGCC
TGTGGTGGCG GCATCGTTTT GCGCGAAATT AATCGGCAAT TGCTGCGTGA ACAGGCTTGG
TGTGTCTATC TCACCAGCGC CATCAGCACC TTGGTTAAAC GTTTAACTGC CGATCAAGCC
AATCCTCGGC CATTGCTGGC GAGCGATATT AATGAACAAC TGGTGATTCA GCTCGCCGAG
CGTTTGCCAC TTTACAGCAC CCTTGCCAAC TGGACGATCC AGACCGATGG CTTGGCTCCA
CAAATTGTGG TCGAACAACT CATTCGGGCT TGGGGTTTAG TGGGCAAACC GCAGGTCAGC
GAAGTGTTTA GCTCATTCAA CAGTCGTTAT TATGTCAAAA GCGGCGCACT GGCAGCCCTA
CCCAATGAAT TAGCCAATCT TGGCCTCACT GGCACATGCT GGCTAATCAG CGACAGTCAT
GTTGGGCCGA TGTATGCGCC AACCTTGATT CAAGCCTTAG AAAACTCCGG TTTCAGCTGC
CAACGCTACG ATATTCCGGC GCAAGAGGCT AGCAAATCAT GGCAGCAAGC AGGCGAATTA
TATACATGGC TGCTCGAAAA TGGCGTGCAG CGTGGCGATA CGGTGTTGGC GTTGGGCGGC
GGCGTGGTTG GCGATTTAGC GGGCTTTATC GCGGCCTCAA TTTTGCGCGG CATCGCGGTC
GTGCAATTGC CAACCACAAT TTTGGCGATG ATCGATAGCA GCATTGGTGG CAAAACAGGC
ATTAATCATC CACGGGGCAA AAATTTGATC GGTGCGTTTC ATCCGCCACG TTTGGTGTTA
ATTGATGATG CAGTATTGAG CAGTTTGCCG CGTCGCGAGC GGGCAGCAGG CTGGGCCGAA
GCCGTCAAAC ATGGCGTGAT TGCTGATGCG CAGTTGTTCG CTGATTTGGA GCAAGCAGGG
GCAAGCCTCA ATGATGTGCC CGCCAAAATA ACCAGCGATC TGTTGGTACG CTCGGCGGCG
GTCAAAATTG GCGTGGTCAA TCGCGACGAA CGCGAAACTG GCGAACGCAT GTTGCTCAAT
TATGGCCATA CCTTGGGCCA AGCCGTCGAG GCCGCGACCC AATACAAACG CTATGTGCAT
GGCGAAGCAG TAGCGATTGG CATGACCTTT GCTGCCAATC TGGCAGTGCA ACTTGGCATG
TGGTCTAGCG CCGAGGCCGA GCGTCAACGG GCTTTGTTGC AAGCACTCGA ATTACCAACC
GCCCTGCCGC GTGATTTGGA TATCGAGGCG ACTTTGGCAG CTTTGAACTT AGATAAGAAA
CGTGCCAAAG GCAGCGTGCG TTGGGTATTG CCAACCCGCA TCGGCCATGC GCAAGTTGAA
TCACACGTTG ACCCAGAATT GGTGCGCAAA TTGGTGCACG AATTGGTCGA GCAAACCTAA
|
|---|
| Protein sequence | MQPSGQSIAL IGPSGAGKST VGVGLAQALG WRFIDLDQLI IERAEKSISD IFSQEGEAGF
RERETAALVQ ALQTDQAVIA CGGGIVLREI NRQLLREQAW CVYLTSAIST LVKRLTADQA
NPRPLLASDI NEQLVIQLAE RLPLYSTLAN WTIQTDGLAP QIVVEQLIRA WGLVGKPQVS
EVFSSFNSRY YVKSGALAAL PNELANLGLT GTCWLISDSH VGPMYAPTLI QALENSGFSC
QRYDIPAQEA SKSWQQAGEL YTWLLENGVQ RGDTVLALGG GVVGDLAGFI AASILRGIAV
VQLPTTILAM IDSSIGGKTG INHPRGKNLI GAFHPPRLVL IDDAVLSSLP RRERAAGWAE
AVKHGVIADA QLFADLEQAG ASLNDVPAKI TSDLLVRSAA VKIGVVNRDE RETGERMLLN
YGHTLGQAVE AATQYKRYVH GEAVAIGMTF AANLAVQLGM WSSAEAERQR ALLQALELPT
ALPRDLDIEA TLAALNLDKK RAKGSVRWVL PTRIGHAQVE SHVDPELVRK LVHELVEQT
|
|---|
| |