Gene Haur_0261 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagHaur_0261 
Symbol 
ID5732156 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameHerpetosiphon aurantiacus ATCC 23779 
KingdomBacteria 
Replicon accessionNC_009972 
Strand+ 
Start bp306391 
End bp307551 
Gene Length1161 bp 
Protein Length386 aa 
Translation table11 
GC content53% 
IMG OID641277385 
ProductABC transporter periplasmic-binding protein 
Protein accessionYP_001543041 
Protein GI159896794 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG4143] ABC-type thiamine transport system, periplasmic component 
TIGRFAM ID[TIGR01254] ABC transporter periplasmic binding protein, thiB subfamily 


Plasmid Coverage information

Num covering plasmid clones3 
Plasmid unclonability p-value0.000633057 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGAAACGTT GGTTACTGAG TTTTTTAACA ATTGGTTCGT TGGTTTTGAC TGGCTGTGGT 
GCGGCGGCTA CGCCAACCGC TGAAACCGCG ATTCAGCCTA CTCCGGCCAC CACGGCTGCC 
GCTGATGTTA CGCCTGCAGC AACCCAAGCC ACCCAAGCGC CGACCGATAG CGGCCAGTTT 
GCCGGCCAAA CCTTGGTGGT GGTTTCGCAC GATAGTTTTG CAATCAGCAG CGAAGTTATC 
TCAGGCTTTG AGCAAATGAC TGGCGCGACC GTCCAAATTC TAGAATCGGG CGATGCTGGC 
GAGGCGCTCA ATAAGAGCAT TTTGGCCAAA GGCGCACCCT TGGGCGATGT GTTGTATGGG 
GTCGATAATA CCTTTTTGAG TCGGGCGCTT GATGCTGATA TTTTCGAGGC CTACGCTGCC 
AAGAATCTCG AGCAAATTCC TGCTGAATTG AAGCTCGATA GCCAAAATCG GGTTTCGCCC 
GTTGATGTTG GCTATGTCAC GATCAATTAC GATAAAGCTG CCTTGGCCGA GGCTGGCCTG 
AGCTTGCCAA CCGATTTGCG CGATTTAACC AAGCCTGAGT GGAAAGGCAA GTTGGTGGTT 
GAAAATCCGG CAACGTCATC GCCTGGCTTA TCATTTATGT TGGCGACGAT TGCCCACTTT 
GGCGAGAGCA GCGATTATAC CTGGCGCAAC TTCTGGAGCG ACCTGCGAGC CAATGAGATC 
AAAGTGGCTA GCGGTTGGGA AGAAGCCTAC TATGGCGATT TTAGCGGAGC CAGTGATGGT 
CAATATCCGT TGGTCGTCAG CTATGCGACC AGCCCTGCTG CCGAAGTTAT CTTTGCGACA 
ACGCCCTTGA CCGATGCACC GACTGGCAAT TTGTTGTTAC CTGGTGGCGC ATTCCAGCAA 
ATTGAATTTG TGGGCTTGCT AAAAGATGCC AAAAACCCTG AATTGGGCAA AGCTTGGATT 
GACTATATGC TGAGCGACAC CTTCCAGAGC GATATTGGCG GACAGATGTT TGTGTACCCA 
GCCCTGCCTA GCGCTAAAGT GCCAGCTGAA TTTACTCAAT ATGCCCAAGT GCCTAGCAAT 
GTAACGACGC TTGCGCCAGC CGAGATTGCT GCCAACCGCG AGCGCTGGCT CAACGAATGG 
CAAGAAACCG TCCTACGCTA A
 
Protein sequence
MKRWLLSFLT IGSLVLTGCG AAATPTAETA IQPTPATTAA ADVTPAATQA TQAPTDSGQF 
AGQTLVVVSH DSFAISSEVI SGFEQMTGAT VQILESGDAG EALNKSILAK GAPLGDVLYG 
VDNTFLSRAL DADIFEAYAA KNLEQIPAEL KLDSQNRVSP VDVGYVTINY DKAALAEAGL 
SLPTDLRDLT KPEWKGKLVV ENPATSSPGL SFMLATIAHF GESSDYTWRN FWSDLRANEI 
KVASGWEEAY YGDFSGASDG QYPLVVSYAT SPAAEVIFAT TPLTDAPTGN LLLPGGAFQQ 
IEFVGLLKDA KNPELGKAWI DYMLSDTFQS DIGGQMFVYP ALPSAKVPAE FTQYAQVPSN 
VTTLAPAEIA ANRERWLNEW QETVLR