Gene Haur_0179 details

Gene Information

• Locus tag: Haur_0179
• ID: 5732088
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Herpetosiphon aurantiacus ATCC 23779
• Kingdom: Bacteria
• Replicon accession: NC_009972
• Strand: -
• Start bp: 208779
• End bp: 209441
• Gene Length: 663 bp
• Protein Length: 220 aa
• Translation table: 11
• GC content: 48%
• IMG OID: 641277303
• Product: phage shock protein A, PspA
• Protein accession: YP_001542959
• Protein GI: 159896712
• COG category: [K] Transcription; [T] Signal transduction mechanisms
• COG ID: [COG1842] Phage shock protein A (IM30), suppresses sigma54-dependent transcription

Plasmid Coverage information

• Num covering plasmid clones: 12
• Plasmid unclonability p-value: 0.394162
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGTCGTTGT TGAGCCGTGT TCGCGACCTG GTTAGCGCTA ATCTCAATGC GATGTTGGAT 
AAGGCCGAAG ACCCTGAAAA AATGGTCAAC GAGTACATGC GGCAATTGCA AGAACAACTG 
TACGAAGCCA AAACCGCTGT TGCATCCGCC ATGGCCGATG AAACCAAATT GCACAACAAA 
ATGGTGACAT TCCAAACCGA AGCTGATCAA TGGCAATCCA AGGCTGAAGC TGCGGTTCGC 
GCAAGTGACG ATGAATTGGC TAAAGCTGCC TTAGGCCGCA AAGCCAATGC TCAAAAAATG 
GCTGATACCT ATCGCCAACA ATACGAACAA CAAGACGAAC AAGTTGAGCA ACTGCAAAAA 
GCCTTGGTCA GTCTTGAATC ACGCTTGTCG GAAGCCAAAG CCAAGAAAGA ATTGATTATC 
GCCAAGAAGA ATCGCGCCGA AACCCAAGAA GCGATTCAAC GCACGGTTCA AGGCTTGGGC 
AACCTCAATG CGATGGATAA ATTATCCCAA ATGGAAGAAC GGGTCGATGA TCGCTTGGCT 
CAAGCCGATG CTATGTCGAA ACTTGAAGGT AGCTCGCTCG AAACTCGCTT TGCCGACCTC 
GAACGCGATA CTGCTGTCGA AGATGAATTG GCCGCTTTGA AAGCAAAAAT GGGTAAACAA 
TAG 

 

Protein sequence

MSLLSRVRDL VSANLNAMLD KAEDPEKMVN EYMRQLQEQL YEAKTAVASA MADETKLHNK 
MVTFQTEADQ WQSKAEAAVR ASDDELAKAA LGRKANAQKM ADTYRQQYEQ QDEQVEQLQK 
ALVSLESRLS EAKAKKELII AKKNRAETQE AIQRTVQGLG NLNAMDKLSQ MEERVDDRLA 
QADAMSKLEG SSLETRFADL ERDTAVEDEL AALKAKMGKQ