| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Haur_0135 |
|---|
| Symbol | |
|---|
| ID | 5732030 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Herpetosiphon aurantiacus ATCC 23779 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009972 |
|---|
| Strand | + |
|---|
| Start bp | 166364 |
|---|
| End bp | 168046 |
|---|
| Gene Length | 1683 bp |
|---|
| Protein Length | 560 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 641277259 |
|---|
| Product | RNA-directed DNA polymerase |
|---|
| Protein accession | YP_001542915 |
|---|
| Protein GI | 159896668 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG3344] Retron-type reverse transcriptase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.994203 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATGGCAG AAACCTCTGC TGGTGCGGCC TCCCGCAGTG AGGTCGAGTG GCATGCCATT
AACTGGCAAC ACGTGAACCA AACTGTGCGT CGGCTGCAAT CCCGTATCGT GAAGGCAACA
CAGGCGGGAC GCTATGGCAA GGTGAAAGCT TTGCAACGGC TCCTGACCCA CTCGTTCAGC
GGCAAAGCCC TTGCCGTGCG ACGAGTGACG GAAAACCAAG GCAAACGGAC ACCGGGAGTG
GATCAGGTCA TCTGGGACAC CCCCGAAAAG AAAGCAACGG CCATCCGATC GTTGCGACGA
CGTGGCTATC AGCCGCGTCC GTTGCGACGC ATCTACATTC CAAAGAAGCA TGGAAAACGA
CGACCCCTTG GCATCCCAAC GATGCACGAC CGAGCCATGC AGGCACTCCA CCTGCTTGCG
CTTGCTCCCA TCGCGGAAAC AACCGCTGAC CCAAACTCCT ATGGATTTCG GTCAGAACGG
GCACCAGCAG ATGCCATTGG GCAATGCTTT GTTGCACTCG CGAAACGGAA GGCACCAACG
TGGATTCTGG AAGGCGACAT CCGATCATGC TTCGACCGAA TTAGCCACGA CTGGCTTTTG
GCTCATGTCC CAATGGATAA AGCCATCCTT CAGAAATGGT TAAAGGCCGG GTACATGGAA
GGAACAACGC TCTACCCCAC CGAGCACGGC ACACCGCAGG GCGGGATTAT CTCGCCAGTA
TTAGCCAATC TCGCGCTGGA TGGCCTCGAA CGAATCCTCT TGGAGCATTG CCCCAGAAGG
ACAGTTCGCG GTATTGCCGC AAAAGTCAAT CTTGTGCGGT ATGCGGATGA CTTCATTATC
ACAGGCAGAT CGCGAGAACT GCTCGAACAG ACAGTCAAAC CGCTGGTAGA AGCATTCCTC
AAGGAACGAG GTCTGGAACT CGCACCGGAG AAAACGCGGA TCACGACCAT TGAGGAAGGC
TTTGATTTTC TTGGACAGAA TGTACGCAAG TACAAGGGGA TACTGCTGAT TAAGCCCTCA
ACGGCGAGTC AACGGACATT CCTCGCCACA ATCCGAGCCA CGATCAAAGC CAATATGGCC
TTGGATGCCG AGAAGTTGAT CCGGCTGCTC AATCCCATCA TCTCGGGATG GACAGCCTAT
CACCATCATG TTGTCTCAAA GGCTGTGTTT CAATCTATGG GCCATGCAAT TTATCAAGCG
CTATGGCGCT GGGCAAAACG AAGACATGCC AACAAACCAA AACGCTGGAT CAAAGAGAAA
TACTTCCGAC CAGTCAATGG AAATCAGTGG GTGTTTTCGG GAGATAGTGC AGGTCGCCCA
ATACGTTTAG TTGCCGCAGG ATACGTGCCG ATTAAACGGC ATGTCAAAAT CCGAGCAGCG
GCTAATCCAT ACGACCCAGC GTGGGAGATG TATTTTGAAA CCCGACTTGG GGTAAAGATA
GCATCAACCC TCAAGGGACG ACGACAACTC CTGCACTTGT GGAAACGACA AAACGGAATT
TGCCCCTGTT GCCAAGAACC GATCACAATG CTGACGGGAT GGCACAACCA TCACGTCATT
CGGCGGATCG ACGGCGGAAC AGACACGGCG GAAAACCGTA TGTTAGTCCA CCCCACATGC
CATACGCAAA TCCATAGCCA GAGGTTAACC GAAGTGAAAC CGTGTCTCGA AAGAGGCAAG
TGA
|
|---|
| Protein sequence | MMAETSAGAA SRSEVEWHAI NWQHVNQTVR RLQSRIVKAT QAGRYGKVKA LQRLLTHSFS
GKALAVRRVT ENQGKRTPGV DQVIWDTPEK KATAIRSLRR RGYQPRPLRR IYIPKKHGKR
RPLGIPTMHD RAMQALHLLA LAPIAETTAD PNSYGFRSER APADAIGQCF VALAKRKAPT
WILEGDIRSC FDRISHDWLL AHVPMDKAIL QKWLKAGYME GTTLYPTEHG TPQGGIISPV
LANLALDGLE RILLEHCPRR TVRGIAAKVN LVRYADDFII TGRSRELLEQ TVKPLVEAFL
KERGLELAPE KTRITTIEEG FDFLGQNVRK YKGILLIKPS TASQRTFLAT IRATIKANMA
LDAEKLIRLL NPIISGWTAY HHHVVSKAVF QSMGHAIYQA LWRWAKRRHA NKPKRWIKEK
YFRPVNGNQW VFSGDSAGRP IRLVAAGYVP IKRHVKIRAA ANPYDPAWEM YFETRLGVKI
ASTLKGRRQL LHLWKRQNGI CPCCQEPITM LTGWHNHHVI RRIDGGTDTA ENRMLVHPTC
HTQIHSQRLT EVKPCLERGK
|
|---|
| |