| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Haur_0015 |
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| Symbol | |
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| ID | 5736849 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Herpetosiphon aurantiacus ATCC 23779 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009972 |
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| Strand | + |
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| Start bp | 18166 |
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| End bp | 19368 |
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| Gene Length | 1203 bp |
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| Protein Length | 400 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 641277136 |
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| Product | RpoD family RNA polymerase sigma factor |
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| Protein accession | YP_001542795 |
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| Protein GI | 159896548 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02997] RNA polymerase sigma factor, cyanobacterial RpoD-like family |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.0128011 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCTCTTG ACGATGAAAT CCTCGACTCT GAGCTTGCGG GTGATGAAAC TGACGATTTT
CCCGCTTTAC GCACACTCAG CGATCTTTTA GCCACTGGCA AAAAACGGGG CTATGTTACG
CCTGGCGAAA TTCAGCAAAT TATCGATTCG CAGCGTGACG AGGATAAACA ACTCGAAGAA
ATTCGCGATA CCTTGCAAAA GGCCAATATT CGAGTCGAGG AAACTGGCGA CGACGACGAT
GAAATTACGG TCAGCGAAAA CCCTGAAGCC GATTTTTCCA ATGAGGGCAT CAGTGTCAAC
GACACCGTGC GCTTATATTT GCGCGAAATC GGCTTAGTGC CTTTGCTCAA AGGCGAGCAA
GAGGTTGAGC TAGCCCGTGC TATGGAAGAT GGCGATAAAG CCCAACAAGA GTTGATCGAG
AACGATCATA CGCTTTCGGA TGTTGAACGC CTAGCCTTGC GCCGCCGCAT CGACCGTGGC
GAGCAAGCTC GTGAACACTT GACCACCGCC AACTTACGTT TGGTGGTCAG TGTGGCCAAA
AAATACATTG GCCGTGGGCT TTCGTTACTC GATTTGATTC AAGAAGGCAA TGTTGGCTTG
ATTCGCGCGG TCGAGAAATT CAACTACACC AAAGGCTTTA AGTTCTCTAC CTACGCCACT
TGGTGGATTC GCCAAGCAAT CACGCGGGCA ATCGCCGACC AAGCCCGTAC CATTCGGATT
CCGGTGCACA TGGTCGAAAC GATCAACCGT ATGATGCGCA CAGCACGGCG TTTAACCCAA
GAGAATGGCC GCGAACCTAG CGATGAAGAA CTGGCCCAGG CACTCGATCT GACGGTCGAG
AAAGTGCGAT CAATTCGCAA AACCTCGATG GAGCCAGTGT CGCTCGAAAC CCCAGTTGGT
CAAGAAGAAG ATAGCCAACT TGGCGACTTC TTGCCCGATG AAAAACTTGA AGCGCCTTCC
GATGCAGCTT CGCATCAGAT GTTGCGCGAA CAAGTTGCTC AGGTACTCGA TCAACTGACC
GAGCGTGAAA AGCGCGTGTT GAAGCTACGC TTTGGGCTAG AAGATGGAAC CCAACGCACA
CTCGAAGAAG TTGGCAAAGA ATTTGGAGTA ACTCGCGAAC GAATTCGCCA GATCGAGGTG
AAGGCGCTGC GCAAACTGCG TCACCCGCGC TTTGGCAAAA AACTCCGCGA TTATCTGGAA
TAA
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| Protein sequence | MALDDEILDS ELAGDETDDF PALRTLSDLL ATGKKRGYVT PGEIQQIIDS QRDEDKQLEE
IRDTLQKANI RVEETGDDDD EITVSENPEA DFSNEGISVN DTVRLYLREI GLVPLLKGEQ
EVELARAMED GDKAQQELIE NDHTLSDVER LALRRRIDRG EQAREHLTTA NLRLVVSVAK
KYIGRGLSLL DLIQEGNVGL IRAVEKFNYT KGFKFSTYAT WWIRQAITRA IADQARTIRI
PVHMVETINR MMRTARRLTQ ENGREPSDEE LAQALDLTVE KVRSIRKTSM EPVSLETPVG
QEEDSQLGDF LPDEKLEAPS DAASHQMLRE QVAQVLDQLT EREKRVLKLR FGLEDGTQRT
LEEVGKEFGV TRERIRQIEV KALRKLRHPR FGKKLRDYLE
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