| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Haur_0010 |
|---|
| Symbol | |
|---|
| ID | 5736844 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Herpetosiphon aurantiacus ATCC 23779 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009972 |
|---|
| Strand | - |
|---|
| Start bp | 11112 |
|---|
| End bp | 11777 |
|---|
| Gene Length | 666 bp |
|---|
| Protein Length | 221 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 48% |
|---|
| IMG OID | 641277131 |
|---|
| Product | pyrimidine 5'-nucleotidase |
|---|
| Protein accession | YP_001542790 |
|---|
| Protein GI | 159896543 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1011] Predicted hydrolase (HAD superfamily) |
|---|
| TIGRFAM ID | [TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
[TIGR01993] pyrimidine 5'-nucleotidase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.32249 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACGCTTC GTTTTGCTTT GTACGATTTA GATAACACCC TTTACGCTGA CTCATCGGGG
CTGATGGAAC AGATTAATGA TCGGATTGGG TTGTTTTTTC AAGAGCATTT ACATTTAGCC
GGCGAGGAAG CCCAACGCTT GCGCCAACAT TATTATGAGC AATATGGCAC AACCTTGGCG
GGCTTACAAA AACACCATGG CGTTGTCGAA ACTGAAGAAT ATTTGGCATT TATTCATCAA
TTAACCCTTG ATGTGCTGTT GCCTGATGAT GGCACGTTGC ATGTTGCGCT CCAAGCCTTG
CCCTTACAAA AAGTGATTTT CACCAACTCG CCGCGTGAAC ATGCGGTGCG CGTGCTCAAT
CGGCTGGGCT TGCACGACCA TTTTGCCCAA ATTTTTGATA TTCGGGCCTT TGAATTTTTG
GCCAAGCCCG ATTTTAGTGC TTACCACACG GTTTTGACTG CGCTGAACGC TCAAGGCCAT
GAATGTGTGT TATTTGAAGA TACCATGGCC AATTTGGCTC CCGCTAAGAG CTTGGGTATG
ACCACAGTGC TGATTGCACC CGCTGACACC CAACATCCCT TTGCTGATAT TATTGTGCCG
AATGTCCTGG CTGGCACCTT GGCCATCCAT GAACGCTGTG GTGTGCCGCT GGATTTGGCG
GCCTAA
|
|---|
| Protein sequence | MTLRFALYDL DNTLYADSSG LMEQINDRIG LFFQEHLHLA GEEAQRLRQH YYEQYGTTLA
GLQKHHGVVE TEEYLAFIHQ LTLDVLLPDD GTLHVALQAL PLQKVIFTNS PREHAVRVLN
RLGLHDHFAQ IFDIRAFEFL AKPDFSAYHT VLTALNAQGH ECVLFEDTMA NLAPAKSLGM
TTVLIAPADT QHPFADIIVP NVLAGTLAIH ERCGVPLDLA A
|
|---|
| |