| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_4205 |
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| Symbol | |
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| ID | 5714706 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009959 |
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| Strand | + |
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| Start bp | 52196 |
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| End bp | 53524 |
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| Gene Length | 1329 bp |
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| Protein Length | 442 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 641277100 |
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| Product | TRAP dicarboxylate transporter, DctM subunit |
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| Protein accession | YP_001542396 |
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| Protein GI | 159046728 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component |
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| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCACCC TCGCGTTCGG TTTCGTCCTG ATCGGGGTGC TGGTCGGCCT CGTGCTGATG
GGCATGCACA TCGCCATCGC CCTCTTCGGC GTCGCCTTCG TCGGCATCTG GCTGATCCGG
GACAATATCG ACCTGGCCTT CCGCATGCTC GAGCTGACCG CCTATTCCGG CATCGCCGAC
TACCTCTTTG CCACCATCCC GCTTTTCGTG CTGATGGGGC TGCTGGTCAG TGTCTCCAAC
GTGGGCCGCG ACACGTTCCA GGTCGCCGAG GAACTGCTGC GCCGGATGAT CTGCGGGCTT
GGCGTGGCCA CCGTTGCGGC CAACACGATC TTCGCCGCCG TCACCGGGGT CTCCATCGCC
TCGGCCGCGG TCTTCACCCG CGTCGCCGTG CCGGAGATGA CCCGCCACGG CTACCGCCCG
GCCTTCTCGG CGGGCACGGT CGCGGGGTCC TCGGTGCTTG GCATGCTGAT CCCGCCCAGC
CTCCTGCTGA TCATCTACGG CATCCTGGCC GAGGTCTCCA TCGGCGGGAT GTTCCTCGCG
GGCATCCTGC CGGGCCTGAT GCTCGCGGGC GGCTTCGTGG TGATGCTGAT CGGGCTGACC
CTCGCCTTCC CCCGCTTCGT GCTCGCCGAC CCCGATGCGG TGAAGGCGCG CAAGCGCGAC
ACCGACCTGA CCCCCATGCC CGCGCGCGAG ATGATCGCCA AGCTGACGCC CATCGTCCTG
CTGGTCATCC TGGTGCTGGG CGGTCTCTAC ACAGGGTTTT TCACCCCCAC CGAGGCCGGC
GGCATCGGCG CATTCGGGGC CCTGATCGTG GCCTTGTCGC GCCGCAGCCT CGACCGCCAC
AAGCTCTGGC AGGTGATGAA ACAGACCGGC GTGATCTCCG TCTCGATCCT GCTTCTGCTG
GTCGCGGCCT CGTTCTATTC CCGCATGCTC GCCATCGCGG GCCTGCCCAA CGCGATCACC
GGCCTCGTCA CCGACAGCGG CTTCGGCCCC CTGGGCTTTC TGTTCTTCTA CGCGGTGATC
ATCCTTCTAA TGGGCATGAT CCTCGACAGC ACCTCGATCC TGCTGATCAT GGTCCCCATC
GCCGCCCCCA TCGCGCAAGG CATGGGCATC GACCTGATGC ATTTCGGCAT CGTCACCGTG
CTGGCGGTCG AGATCGGGCT GCTCACGCCG CCCTTCGGCA TCTCCGTCTT CACGGTCCAC
AACACGCTCA ACGACCCCGA TGTCTCGGTG GAGAGTATAT TCGCCGCCAC CCTGCCCTTT
ATCGCGGTGA TGCTGCTGGT GCTCGTGATC GTCGCCCTCG TGCCCACCAC CGCCACCCTG
TTCCTCTAG
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| Protein sequence | MTTLAFGFVL IGVLVGLVLM GMHIAIALFG VAFVGIWLIR DNIDLAFRML ELTAYSGIAD
YLFATIPLFV LMGLLVSVSN VGRDTFQVAE ELLRRMICGL GVATVAANTI FAAVTGVSIA
SAAVFTRVAV PEMTRHGYRP AFSAGTVAGS SVLGMLIPPS LLLIIYGILA EVSIGGMFLA
GILPGLMLAG GFVVMLIGLT LAFPRFVLAD PDAVKARKRD TDLTPMPARE MIAKLTPIVL
LVILVLGGLY TGFFTPTEAG GIGAFGALIV ALSRRSLDRH KLWQVMKQTG VISVSILLLL
VAASFYSRML AIAGLPNAIT GLVTDSGFGP LGFLFFYAVI ILLMGMILDS TSILLIMVPI
AAPIAQGMGI DLMHFGIVTV LAVEIGLLTP PFGISVFTVH NTLNDPDVSV ESIFAATLPF
IAVMLLVLVI VALVPTTATL FL
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