Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dshi_4191 |
Symbol | |
ID | 5714722 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dinoroseobacter shibae DFL 12 |
Kingdom | Bacteria |
Replicon accession | NC_009959 |
Strand | + |
Start bp | 37297 |
End bp | 38292 |
Gene Length | 996 bp |
Protein Length | 331 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 641277086 |
Product | TRAP dicarboxylate transporter, DctP subunit |
Protein accession | YP_001542382 |
Protein GI | 159046714 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1638] TRAP-type C4-dicarboxylate transport system, periplasmic component |
TIGRFAM ID | [TIGR00787] tripartite ATP-independent periplasmic transporter solute receptor, DctP family |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.960097 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACACATC TGACAAGAAG AACCGCGCTC GGTCTTGCAA CGGCCGCACT GCTCGTTGCG GGCACGGCGA GCGCGCAGGA CACCCTGGAG CTGCGCATGT CGGTCGAAAG CACGCCCGGC GCCTCGACCC AGCAGATCCT CGCTGCGTTC CGCGACGCCC TGCAGGCCGA GATGGGCGAT GCCGTCGCCA TCGAGTATTT CGACAGCGGC ACCCTGGGCG ACGAGATCGT GCACATGCAA CAGGTGCGCA CGGGACAGCT CGACGTGATC CCGATCGGCT CCGACGCGGT CCAGCTCGAC CCGAAATTCG CCGTCTTCGA CATCCCCTTC CTGTTTAACA GCCGCGACCA GGTCGCCGCC GTGCTCGACG GTCCGATCGG CGCCGAGCTG GACCAGTCGT TCCAGGAAAA CGCGGGGCTG AAGGTGCTGG GCTTCGGCGA GATCGGCTTC CGGCACATCA CCAACAACGT GCGCCCGGTC GTGACCCCGG CGGACCTGGA GGGGCTGAAA CTCCGCACCC CCGGCAGCAG CACGCGGATC ATGTCCTTCG AGATGCTGGG CGCCTCGCCG ATCAAGATGA ATATCGGGGA AGTCTACCTG GCCCTGCAGC AGGGCGTGAT CGACGGGCAG GAAAACCCCT TTGGCAACAT CGCGAAATGG TCCTGGGACG AGGTCCAGAA ATACATCTCC CTGTCGCGCC ACGTCTACAC GCCCATTACC CTGGTGATGA ACCTGCGCAC CTATGAGGGG CTGACCGACG AACAACGCGA CGCGGTCCAT GCCGCCGCAC GCGTGGCCGT GGACTCGAGC CGTGCCTACG GGGCCGAGAA CGACGCCTCG CTCGAGGCCG TGATCCGCGA GCGGTCCCCG GATGTCGAAC TCAACGAGAT CGACGCCGCC AGCTTCCGGG ACGTGGCCAA GGCCATCGGC GCCGAGATCG GCAAGACCGC GGGCGAGGCG TTCACCGCGC GCTTCGTCGA AGCCGCGTCC CAGTAA
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Protein sequence | MTHLTRRTAL GLATAALLVA GTASAQDTLE LRMSVESTPG ASTQQILAAF RDALQAEMGD AVAIEYFDSG TLGDEIVHMQ QVRTGQLDVI PIGSDAVQLD PKFAVFDIPF LFNSRDQVAA VLDGPIGAEL DQSFQENAGL KVLGFGEIGF RHITNNVRPV VTPADLEGLK LRTPGSSTRI MSFEMLGASP IKMNIGEVYL ALQQGVIDGQ ENPFGNIAKW SWDEVQKYIS LSRHVYTPIT LVMNLRTYEG LTDEQRDAVH AAARVAVDSS RAYGAENDAS LEAVIRERSP DVELNEIDAA SFRDVAKAIG AEIGKTAGEA FTARFVEAAS Q
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