Gene Dshi_4191 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDshi_4191 
Symbol 
ID5714722 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDinoroseobacter shibae DFL 12 
KingdomBacteria 
Replicon accessionNC_009959 
Strand
Start bp37297 
End bp38292 
Gene Length996 bp 
Protein Length331 aa 
Translation table11 
GC content66% 
IMG OID641277086 
ProductTRAP dicarboxylate transporter, DctP subunit 
Protein accessionYP_001542382 
Protein GI159046714 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1638] TRAP-type C4-dicarboxylate transport system, periplasmic component 
TIGRFAM ID[TIGR00787] tripartite ATP-independent periplasmic transporter solute receptor, DctP family 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.960097 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACACATC TGACAAGAAG AACCGCGCTC GGTCTTGCAA CGGCCGCACT GCTCGTTGCG 
GGCACGGCGA GCGCGCAGGA CACCCTGGAG CTGCGCATGT CGGTCGAAAG CACGCCCGGC
GCCTCGACCC AGCAGATCCT CGCTGCGTTC CGCGACGCCC TGCAGGCCGA GATGGGCGAT
GCCGTCGCCA TCGAGTATTT CGACAGCGGC ACCCTGGGCG ACGAGATCGT GCACATGCAA
CAGGTGCGCA CGGGACAGCT CGACGTGATC CCGATCGGCT CCGACGCGGT CCAGCTCGAC
CCGAAATTCG CCGTCTTCGA CATCCCCTTC CTGTTTAACA GCCGCGACCA GGTCGCCGCC
GTGCTCGACG GTCCGATCGG CGCCGAGCTG GACCAGTCGT TCCAGGAAAA CGCGGGGCTG
AAGGTGCTGG GCTTCGGCGA GATCGGCTTC CGGCACATCA CCAACAACGT GCGCCCGGTC
GTGACCCCGG CGGACCTGGA GGGGCTGAAA CTCCGCACCC CCGGCAGCAG CACGCGGATC
ATGTCCTTCG AGATGCTGGG CGCCTCGCCG ATCAAGATGA ATATCGGGGA AGTCTACCTG
GCCCTGCAGC AGGGCGTGAT CGACGGGCAG GAAAACCCCT TTGGCAACAT CGCGAAATGG
TCCTGGGACG AGGTCCAGAA ATACATCTCC CTGTCGCGCC ACGTCTACAC GCCCATTACC
CTGGTGATGA ACCTGCGCAC CTATGAGGGG CTGACCGACG AACAACGCGA CGCGGTCCAT
GCCGCCGCAC GCGTGGCCGT GGACTCGAGC CGTGCCTACG GGGCCGAGAA CGACGCCTCG
CTCGAGGCCG TGATCCGCGA GCGGTCCCCG GATGTCGAAC TCAACGAGAT CGACGCCGCC
AGCTTCCGGG ACGTGGCCAA GGCCATCGGC GCCGAGATCG GCAAGACCGC GGGCGAGGCG
TTCACCGCGC GCTTCGTCGA AGCCGCGTCC CAGTAA
 
Protein sequence
MTHLTRRTAL GLATAALLVA GTASAQDTLE LRMSVESTPG ASTQQILAAF RDALQAEMGD 
AVAIEYFDSG TLGDEIVHMQ QVRTGQLDVI PIGSDAVQLD PKFAVFDIPF LFNSRDQVAA
VLDGPIGAEL DQSFQENAGL KVLGFGEIGF RHITNNVRPV VTPADLEGLK LRTPGSSTRI
MSFEMLGASP IKMNIGEVYL ALQQGVIDGQ ENPFGNIAKW SWDEVQKYIS LSRHVYTPIT
LVMNLRTYEG LTDEQRDAVH AAARVAVDSS RAYGAENDAS LEAVIRERSP DVELNEIDAA
SFRDVAKAIG AEIGKTAGEA FTARFVEAAS Q