| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_4171 |
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| Symbol | mdoD |
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| ID | 5714686 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009959 |
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| Strand | + |
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| Start bp | 19852 |
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| End bp | 21336 |
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| Gene Length | 1485 bp |
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| Protein Length | 494 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 641277066 |
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| Product | glucan biosynthesis protein D |
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| Protein accession | YP_001542362 |
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| Protein GI | 159046694 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG3131] Periplasmic glucans biosynthesis protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.13351 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGAAGGC GGACGTTTCT GGCCGGGGCC ACCTGCCTCG CGACCCTGCC GCGGCTGGCC
CCGGCGCAAT CCGTGCCCAC GCTGCTGGAC GCGGCCCGCG CTTTGGCCGC CCAGCCCTTC
GCGCGCGATA CCGCGCCGCT GCCCCCGCCC TTCGCGGGGC TGAGCTATGA CGCCTATCGC
GGCATCCGCC CGATCCCGGG CCGGGCCGCC CTGCTGCCCC ATGGCCCGGA TTTCGCGGTC
GATTTGCTGC CGCCGGGACT GTTTTTCCCC GACCCGGTGC GAATCGACCT TGACCGGGGC
GACGGGCCGC AAGAGGTCAC ACTCACCCCT GACCTGTTCG ACTTCGCGCC CCGGTATTTC
GACACCATCC CCGCCACCGC CCCCGGCGCG GGGTTCTCGG GCCTGCGCCT GCGCCACCCG
CTGAACACCC CGGACGTGCT GGACGAGGTG CTGGTGGTTC AGGGGGCCAG CTATTTCCGC
GCCATCGGGC AGGCGATGGT CTACGGCCTC TCGGCCCGCG CGGTCGCCCT CGGCACCGGC
GGGGCAGGGC CGGAGGAATT CCCCCGCTTC ACCCATCTGC GTCTGCACCC GGCCAGGGAC
GGCACCGTTC GGCTGGAGGC GGTGATCGAC AGCCCGTCGC TGGCCGGGCA TCTCGACATG
GTCCTGCGCC CCGGTGAAGA CACGGTTTGC GACGTGGCCG TGACCCTGCT GCCGCGCCGC
GAGATCGCCG ATATCGGCAT CGCCCCGCTG ACCTCGATGT ATCTCAAGGG CCCGCTGCGC
GCCGCAGTCA GCGACGATTT CCGTCCCCGC GTCCATGACA GCGACGTGCT GCGCATCGAG
AACGGCGCGG GCGAGACGCT CTGGCGTCCC ATCGCCAACC CCGCCCGTCT GGAAACCTCC
GCCTTTCTCG ATGACGGGCC GGTCAGCTTC GGCCTGTTCC AGAGCCGGCG GCGGTTCACC
GATTTCGAGG ATACCGAGGC GCGGTACCAC GACCGCCCCG CGGCGGTGGT GCGCCCGTCA
GGCGACTGGG GCCGCGGCGC GGTCATGCTG GTGGAGATCC CCACGAGCGA CGAGTTCATG
GACAATATCG TGGCCTTCTG GCGCCCCGAG GCCCCCCTGA CCGCAGGCAG CGAGCACCGC
TTCGCCTACA GTCTGACCTG GACGCGCGCG GCCCCGGGCA CAGGCCTGCC CCACGCCATC
GCCCAAAGCC GCAGTGGCCG CGAACACGAC CGCCCGGGCA CCCGGCGCTA TGTCATCGAC
ATCGCGGGCG ACGCCACCGG TCTTGCCCCC GAAATCACGG GGCCGGAGGC GGTTGCGATC
ACCGGCGTCA GCCTCTTTGC CCTGCCCGAG GGACGCGGCA GCCGCCTGAC CTTCCTGCTG
ATCCCGGGGG AGGCCCGCGC CGCCGACCTG CGCGTGACTT TGGGCGTAAA TGGCGCGCCG
GTCTGGCTCC ACCGCTGGAC CCGGGCGCGC GACGGCGGGG TGTAG
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| Protein sequence | MRRRTFLAGA TCLATLPRLA PAQSVPTLLD AARALAAQPF ARDTAPLPPP FAGLSYDAYR
GIRPIPGRAA LLPHGPDFAV DLLPPGLFFP DPVRIDLDRG DGPQEVTLTP DLFDFAPRYF
DTIPATAPGA GFSGLRLRHP LNTPDVLDEV LVVQGASYFR AIGQAMVYGL SARAVALGTG
GAGPEEFPRF THLRLHPARD GTVRLEAVID SPSLAGHLDM VLRPGEDTVC DVAVTLLPRR
EIADIGIAPL TSMYLKGPLR AAVSDDFRPR VHDSDVLRIE NGAGETLWRP IANPARLETS
AFLDDGPVSF GLFQSRRRFT DFEDTEARYH DRPAAVVRPS GDWGRGAVML VEIPTSDEFM
DNIVAFWRPE APLTAGSEHR FAYSLTWTRA APGTGLPHAI AQSRSGREHD RPGTRRYVID
IAGDATGLAP EITGPEAVAI TGVSLFALPE GRGSRLTFLL IPGEARAADL RVTLGVNGAP
VWLHRWTRAR DGGV
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