| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_4144 |
|---|
| Symbol | |
|---|
| ID | 5714610 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009958 |
|---|
| Strand | - |
|---|
| Start bp | 76612 |
|---|
| End bp | 77184 |
|---|
| Gene Length | 573 bp |
|---|
| Protein Length | 190 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 641277040 |
|---|
| Product | hexapaptide repeat-containing transferase |
|---|
| Protein accession | YP_001542336 |
|---|
| Protein GI | 159046667 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0110] Acetyltransferase (isoleucine patch superfamily) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.595772 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCGAGA CTGATCCGCA CCCCCGCAAG AAGAGCCTCT CCTACCCCGC CCGCGTACTG
CGCGGGATCG GTGCGATGCT GGACCCCCGG GCCTGGGCCC ATGCGGTGCG GCTGGTGAAT
TATTATAACT ACAGTCACGT TATCCCCCGC CGGTCCCTGC GGCTCGGCCG CGATGTCCGG
CTCAGCCCGA ACGCGGCCTT CTCCAACCCC GAGCGGATCG AGATCGGCGA CCGGGTGTCG
ATCGGGGCCC ATTGCACGCT CTGGGCGGGC CCCGGCACGG GGCGAATCGA GATCGGAGCG
GACGCGCTCT TTGGTCCGGA GGTCTTCGTG ACGGCGGCGG GCTACAGGTT CAACGAGGGG
AGCCCGGTCA CCGCGCAGGC GATGGACGAG GCGGATGTGG TGATCGGGCG CGATGTCTGG
CTCGGTGCGC GCGCCATGGT GATGCCCGGC GCCCGGATTG GCGACGGCGC GATCATCGGC
GCTGGCGCCC TGGTGCGTGG CGAAATCCCC GCAGGCGCTA TCGCCGTAGG CGTGCCCGCT
AGGGTAGTGG GCCAGCGCGC GGCGGACCCC TGA
|
|---|
| Protein sequence | MSETDPHPRK KSLSYPARVL RGIGAMLDPR AWAHAVRLVN YYNYSHVIPR RSLRLGRDVR
LSPNAAFSNP ERIEIGDRVS IGAHCTLWAG PGTGRIEIGA DALFGPEVFV TAAGYRFNEG
SPVTAQAMDE ADVVIGRDVW LGARAMVMPG ARIGDGAIIG AGALVRGEIP AGAIAVGVPA
RVVGQRAADP
|
|---|
| |