| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_4135 |
|---|
| Symbol | |
|---|
| ID | 5714650 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009958 |
|---|
| Strand | + |
|---|
| Start bp | 66718 |
|---|
| End bp | 68040 |
|---|
| Gene Length | 1323 bp |
|---|
| Protein Length | 440 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 641277031 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001542327 |
|---|
| Protein GI | 159046658 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1035] Coenzyme F420-reducing hydrogenase, beta subunit |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCTGCTG AGCCCGGTCC CATGCCCGCC GACACACTCG GCCCCGCCTC GCGCGTGCCC
CCTGACAGCC CTGCCTTGCG TCGGGTCCAG GCCGGCGATC TCTGTGCCGG CTGCGGGGGC
TGCGCCAGCA TCGCTCCCGA CAAGCTGCGC ATGGCCTTGG TGGAGCCTGG CTTCCTGCGC
CCGGTTCAAT CGGCCCCGCT GAGCCCGGTC GAAGAGGACA CGATCGCCGC GATCTGCCCG
GGTCTCGGCC AAAGGGTCGA GGATGCAGGG CGGACACCCT CGGTGCTCTG GGGCCCTTAT
CTGGAGATGC AGACGGGCTG GGCCACGGAT CCGGACTTGC GTTTCGCAGG CTCTTCGGGG
GGGGCGCTGT CGATGCTGCT GTGTCATCTT CTGGAGACAG GAGCGGTGGA TGGGGTGATC
CAGACCGCAG CGGCTCCGCA ACTCAGCATT GGCAACGGCA CGGTGCTCTC CACCCGGTCC
GAAGGCGTTC TGGCAGCAGC CGGGTCCCGC TATGCCCCGT CGGCGCCCCT GGAGGGGCTG
CATGCGCGCC TGACCGCCAG TCCAGCTCAG CGTTTCGCCT TCGTTGGCAA GCCCTGCGAT
GTCGCTGCCC TGCGGGCCCT CCAGGAGCAA GACCCGGGTC TAGCAGCGCG GGTGCCGGTT
CTGTTGTCGT TTTTCTGTGC CGGGGTTCCA TCCCTGCGGG GGGGCCTGGA GGTGCTTGCG
GCCCTTGAAG CGCCCTACCA AGATACGGTT GCGTTCCGCT ATCGCGGCAA TGGCTGGCCG
GGATATGCCA CTGCGACCCT CGCGGATGGC ACCACCCGGC AGATGAGTTA CCATGACAGT
TGGGGCAGGA TCCTGTCCCG TCATGTCCAG CACCGATGCA AGATCTGTGC CGACGGCACA
GGTACCGCGG CAGACCTTGT CTGTGCCGAT GCATGGGAAG CAGACGAGAA AGGTTATCCT
CTATTCGATG AACAGGAGGG CGTCAGCTTG ATTGTGGCCC GTACGGTGAA GGGGCAGCAG
ATCCTGGCTG CGGCCCAAGC TGCTGGACGT CTTGAGACTG CACCGTTTGA TCCCACGATC
CTCGCCGCCA TTCAGCCGGG TCAGCGGGAA CGTCGACGGG CGCTCTTGGC GCGACTAGCG
GGCCTGCGGG TTTGCGGGCG CCCGGTTCCC GACTATCGCG GCCTCACCTT GAAGGCGGCG
GCCGCCCAGA ACCCCTTGGG CCGCAACCTG CGTAACTTTT TCGGAATGAT AAGGCGCAGC
CTGCGCCGTA AGCCCGGGCG CCCGCGCCTC TTTACATTGC CTTCCGGATC TTCCCATGAC
TGA
|
|---|
| Protein sequence | MPAEPGPMPA DTLGPASRVP PDSPALRRVQ AGDLCAGCGG CASIAPDKLR MALVEPGFLR
PVQSAPLSPV EEDTIAAICP GLGQRVEDAG RTPSVLWGPY LEMQTGWATD PDLRFAGSSG
GALSMLLCHL LETGAVDGVI QTAAAPQLSI GNGTVLSTRS EGVLAAAGSR YAPSAPLEGL
HARLTASPAQ RFAFVGKPCD VAALRALQEQ DPGLAARVPV LLSFFCAGVP SLRGGLEVLA
ALEAPYQDTV AFRYRGNGWP GYATATLADG TTRQMSYHDS WGRILSRHVQ HRCKICADGT
GTAADLVCAD AWEADEKGYP LFDEQEGVSL IVARTVKGQQ ILAAAQAAGR LETAPFDPTI
LAAIQPGQRE RRRALLARLA GLRVCGRPVP DYRGLTLKAA AAQNPLGRNL RNFFGMIRRS
LRRKPGRPRL FTLPSGSSHD
|
|---|
| |