| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_4129 |
|---|
| Symbol | |
|---|
| ID | 5714668 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009958 |
|---|
| Strand | - |
|---|
| Start bp | 60514 |
|---|
| End bp | 61947 |
|---|
| Gene Length | 1434 bp |
|---|
| Protein Length | 477 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 641277027 |
|---|
| Product | polysaccharide biosynthesis protein |
|---|
| Protein accession | YP_001542323 |
|---|
| Protein GI | 159046654 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2244] Membrane protein involved in the export of O-antigen and teichoic acid |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTGAAGG CTGCGGGGGT GGTGTTTGCA AGCCAGGGGC TGGTCACGGT GATCCTGTTT
GCTCGCAATA TACTTATCGC ACGGCTTATT TCGGTGGAGG ACTTCGGTAT CGCGAGCAGT
TTCGCGATCG CCTTTGCCTT CATCGAAAGC GCTACGAATG TGGGGCTCAA CCGGCTGGTC
GTCCAGGATC GGGATGGGGA TGATCAGCTT TTCGTCGATG TGCTTCACCT GTTTCAGGTG
GTCCGAGGTC TGCTAGGCGC CGGGGTCACG CTGATCCTAG CCGCACCCTA CGCTGGGCTG
CTGAACATCC CCGAGGTGAC CTGGGCCTTC ATGGCGCTGG CGTGGGTACC TTTCATACGC
GGGTTTCTCA ATCTCGATAT GTTCCGCATT CAGCGCAGGA TGGATTTCCA AGCCTTCGCG
CGAGCGAGCG TCCTGTCGGC TCTGTCGTCG ATCCCGGTGG TGGTGCTGAT CTACCTAATC
ATCGGGGATT ATCAGACCAT GCTTTGGGCG ATCATCGGGC ATCAGACAGT GTTGGTGGTC
TTATCGCATC TGATGGCCAA AAGGCCCTTC GGCCTCGCTT TCGAGCCCAC GATCCTGCGC
CGGGCCTTGG GGTTCGGCAC GCCGCTTCTG CTGAACGGAC TGGTGATGTT CACAGTGATC
AATGGCGACC GGCTGATCGT CGGGAACCAA CTAGGTGTCG AGACGCTTGC CTGGTTCTCT
GCGGTGTTCA TGATCACCTA CACACCTACA ACCGTCATGG CGAACACGAT GCAATCAGTC
TTACTGCCGC GCCTATCGGG GCTTCAGAAT ACACGGGAGG AGTTTCTTGT CGCCGCCGAA
GATGCAATGG CCTTGGGATT TCTGATCGGG ATCGTGGTGG CGGTCGGGAT CGCTCTCTTC
GGACCGATCC TGCTTCTGTT GGCGTTCGGG AACAAGTTCG CACCCGGCCT AGAGATCCTC
CTGCTGATGG GTGTCGTGCA GGCCGTGCGC ATCAGCAAGC TAGGTCTATC GATGATTGCC
TTGGCCCGCG GAACCACCAC CAATATGCTC TATGCCAATC TGGCGCGCCT TCTCGTGCTT
CCCGCAGGCT TGGGCGCGCT GATGCTCGGA CATGGGATCG AAGGCTTGCT GCTCGCCTCC
CTGGGTGGAG AACTGCTGGG TCTGCTGGTC TCCAAAGTCC TGTTGCACCG CCAAATCGAG
CCTTCCCTGA AAGTGCCCTG GATACTCGTG GGGCTGTCGG GACTGACCTT CGGCTTGATC
CTGGTGCTAG ACGCGTTGCA TCCGCCAACG GTTGAGATCT TGGGCAATGT TTATCCCGCA
CAACTCGCCC TACTAATCCT TGTCGGATTA GCCGCCTTGA GCACACGCCC TGTACGCAAC
CTAGTGCGGG GTAAGAAACA TCCTGCTCAG GCACAAAAAC CGGAAAAACC TTGA
|
|---|
| Protein sequence | MLKAAGVVFA SQGLVTVILF ARNILIARLI SVEDFGIASS FAIAFAFIES ATNVGLNRLV
VQDRDGDDQL FVDVLHLFQV VRGLLGAGVT LILAAPYAGL LNIPEVTWAF MALAWVPFIR
GFLNLDMFRI QRRMDFQAFA RASVLSALSS IPVVVLIYLI IGDYQTMLWA IIGHQTVLVV
LSHLMAKRPF GLAFEPTILR RALGFGTPLL LNGLVMFTVI NGDRLIVGNQ LGVETLAWFS
AVFMITYTPT TVMANTMQSV LLPRLSGLQN TREEFLVAAE DAMALGFLIG IVVAVGIALF
GPILLLLAFG NKFAPGLEIL LLMGVVQAVR ISKLGLSMIA LARGTTTNML YANLARLLVL
PAGLGALMLG HGIEGLLLAS LGGELLGLLV SKVLLHRQIE PSLKVPWILV GLSGLTFGLI
LVLDALHPPT VEILGNVYPA QLALLILVGL AALSTRPVRN LVRGKKHPAQ AQKPEKP
|
|---|
| |