| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_4111 |
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| Symbol | |
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| ID | 5714619 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009958 |
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| Strand | + |
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| Start bp | 41989 |
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| End bp | 44979 |
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| Gene Length | 2991 bp |
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| Protein Length | 996 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 641277013 |
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| Product | integrase family protein |
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| Protein accession | YP_001542309 |
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| Protein GI | 159046640 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.161486 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACGTAT GCTTTGACCG CGATACAGTG ATGGCTGTCG AGATCGTAGA TGAGCTGCTA
CGCGGCGATG CCGTCCCAGA AGACTGGACT GTTGCGATCG AGACCGCAGT GGCGGACCGC
CGTCCTGACC TCGGCCCCAA AGACCGTAAC CGCATCGTCG CCCGCGTGAT CGAGCGGGTA
AACGACCGGC GGGGTCTGTC CCTCAAGAAA TCACATCTTC ATCGCCCACC GGCCGCCATT
CCTCCGCTCC GGGATGCCGA ATGGCCTCCG CAGGCGATGG AGATCATCCA CCTGAGGCAC
CGCCTGGATG AGATGCTGAC AGCGGCCGGG CGCTCCACGC TCGGGGCCGA CTTGCCGCGC
CTCATTCTGG CCTGTGCTGC CTTGCGTGGG GGGCTTTGTC GTTTGGAAGG TTTGCATGCG
TTGGCGCGTG CAGTTGGCTC GGGGGAATTG ACACTCACTG GCGCCGACGC GTTTCCCAAC
CTCGTCTGGA TCGACTTGGA TCTGCAAATC GCAAAGGGGA CGCAGCAGCA CACCAACACA
AATCCCGGCA GCGAATACCT GCGCTGGTTC CCCGATGTCA CAACGCTGGC CCTGATCGAT
CGATGGCGCC GGCTGGGGCC CCTGACCTAT CACGTCCCGT CCTCTCCTGC AGCGCTCTAC
ACCGACATGC TGGACCTGTT GGGGGCGCCG GAGCTGAAGA AACAAGTACC GGCCACCCGG
TTCCCGCTCG TAGCGCTGGC TGCGCTCGAA CATGTCTCGG GCGTCGCCCT CCCGGTCAGC
GTCGAGGCCG TGGCGTCCGG GCATAGCGTT GGCCTCTCGG TGCTGCCTGA GACGTGGGAC
GCCCTGTGCA CGCGTGGTCA GCCTTTGAAG GAGCCTCCGG ACACTCGAGG CGCGGCCAGG
ACAGCGCAAC CGCAACCCTC CCGCACCCCA AAATCAGCTG CTCCGCGCCC TGCTCCTGCG
GATCATGCCA AGGCGCAGCT ACTGGAGGCA CTGAAAGAGT GCCTCGACAC CCATGCGGCA
ACGTCCTCGG TCAAGGGGCG CAAAGCAATG TCTGATGCCC TGCAGACCCT TCAACAGGAG
GCCGTCGGGA TCTGGCACTC CCTCGAAGCT CTGGTCAGCT GGTATCGGAC CCTGCTTCGC
AACGGCGACA AGCCACGCAC CGTGAAGGAC TATCATTCCA TCGTGGGTCG GCACGTACTG
GCGGTCATGA CCGAGGACGA CCCGAGGAAC CTCACACCAG AGGCTCTGCG AGACATGTTC
GAGCAGGTTC TGGCGCGCTC ATCCTACGCC AATCCGGCCC ATCCGCTCGG CCGCCTCGCG
CATTTTGCCC GCCACGCAGA GCGGGTCTTG GATTGGCCCG ACGCTGATTT TTCCGGCTTT
GGAGATCAGG GCAAAGCCAG CGCCACATTC GTCCGTACCG CTGCCCTGCC CATGGCCATC
TATCCCGAGG TGTTTGACGC GATCCTGCAG ACCACCGACC TGAGCCCGGA CATGGCCGAG
TGTTACGCCG TTGCGTTCGC ACTGGTTGCC TGGGGCGGCT TGCGGATCGA CGAGGCCCAT
GGGCGCGTGG TCGATGACAT CGGGACTGAC TTGACGGTAT TTGTGCACGC CACAAGCAGT
CACGGTCTGA AATCGGAGGC CGCGCGCCGG CTGATCCCCC TCGCCCTCTT CGCGCCGCCA
GAGGTCGTCG CACAGGTCAA AAGCTTCGTG GCGCGCCGGG CGACCGTACC GGACAAGACC
CGCGACAAGC TTCTCGATCT GGGCACGCTC TTCCCCGGCG ACCGCTTCGA CACAGGGACG
TTCCGCACGC TACTGCAACG CACTCTTGGC CAGATGCTGG GGATCGCGGT GAGGCCGCAT
GATTTCCGGC ACACGCTGAT CAGTGCCCTG CAGCTTCTGT TCCATCTTGG TGCAGATGCA
GTTGACACGA TCGAAGCCGT GAGCGGCTGG AACGCGAAGC GGCAAAAACG CATCCGGCAC
GCGCTGCTCG GCGTCTGTCC GGACCCGCGC CGGGCCCCAA GGCAGATCTC GGCGTTGGCC
GGGCACCGCG ATCTCAGCGC GATCAGCGGC ACCACCTATT GCCACTTGAC CGACCTGGCG
CTTGGATGCC TGATCCAGAG CGCCGAGGAG CGGTTGCCGG CCTCTGTTGC CGCTCGGTGG
CTTGGCCTCA ACCGTCGGAG CCTGCGACCC TTCATCGACG ATAATGATAC GGTCCGGCTG
GAGGACTTGC GCGGGCCACT CGTGAATAAG ATGGATATCG CGTGGCGCAC CACGCGAACG
GGACAGTTAC CCTCACCCGA GCCTCGCGTA GCAAAGCCGG TCAGGGTCAC GCCGACGGTC
GTCCATGCGG TCCTCAAAAT GGCCGAACAT GACACGGACA CGCTGACCAT TGCCGATCAG
CTCAACATCA TGCGGGATCA GGTGACCCAC ATGCTGGCGA CCGCCGAAGA CCTGATGGCG
GCAACCACCC AGAAAAAGGG GGCCCGCCAT GTTGGAGCTC ACGACCAGGA CCGCCCCAAC
TGGCCAGTCG CCCGTTTTGC AGATCAGCCG GGCGAAGTGC GATTCCTGGC AAGGCTGTTG
GCCGATGCAG AGACATTGCC GCCTGAGAAT ATGCTGAAAT GGTCTATGGT GGTGCTGACC
CATGCGGACC GACATCGGCC TTGTCTACGT TTCCTTGGGG CCCCCGCCGC ACAGAATTGG
CTAGAGCTGT TCCCAAAGGC CTTCCCCAAG TCCTCTCTGG ACATCCTGAT CCGATTCCCG
TCGGATGTGA CGCCCGAGGC TGCGGAAAAG GCTTGGTGCA CGGCCATAGG TGCCAAGGGG
AACTACCAGA CGGAGTCCAG TGGTCATGGT ACCAGTGTCT GCCCGACAGC CCCCGGACTG
ATCATGCTGC GGAAGGTTTC GAAAAAGGCC AAGGAGAGCC GTTCCTTCTC AACCCTCCGC
CGTGCCGCGT TTTGTATCGC GGTTACCTGT CGCGTGACTG ATGAGGCTTG A
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| Protein sequence | MNVCFDRDTV MAVEIVDELL RGDAVPEDWT VAIETAVADR RPDLGPKDRN RIVARVIERV
NDRRGLSLKK SHLHRPPAAI PPLRDAEWPP QAMEIIHLRH RLDEMLTAAG RSTLGADLPR
LILACAALRG GLCRLEGLHA LARAVGSGEL TLTGADAFPN LVWIDLDLQI AKGTQQHTNT
NPGSEYLRWF PDVTTLALID RWRRLGPLTY HVPSSPAALY TDMLDLLGAP ELKKQVPATR
FPLVALAALE HVSGVALPVS VEAVASGHSV GLSVLPETWD ALCTRGQPLK EPPDTRGAAR
TAQPQPSRTP KSAAPRPAPA DHAKAQLLEA LKECLDTHAA TSSVKGRKAM SDALQTLQQE
AVGIWHSLEA LVSWYRTLLR NGDKPRTVKD YHSIVGRHVL AVMTEDDPRN LTPEALRDMF
EQVLARSSYA NPAHPLGRLA HFARHAERVL DWPDADFSGF GDQGKASATF VRTAALPMAI
YPEVFDAILQ TTDLSPDMAE CYAVAFALVA WGGLRIDEAH GRVVDDIGTD LTVFVHATSS
HGLKSEAARR LIPLALFAPP EVVAQVKSFV ARRATVPDKT RDKLLDLGTL FPGDRFDTGT
FRTLLQRTLG QMLGIAVRPH DFRHTLISAL QLLFHLGADA VDTIEAVSGW NAKRQKRIRH
ALLGVCPDPR RAPRQISALA GHRDLSAISG TTYCHLTDLA LGCLIQSAEE RLPASVAARW
LGLNRRSLRP FIDDNDTVRL EDLRGPLVNK MDIAWRTTRT GQLPSPEPRV AKPVRVTPTV
VHAVLKMAEH DTDTLTIADQ LNIMRDQVTH MLATAEDLMA ATTQKKGARH VGAHDQDRPN
WPVARFADQP GEVRFLARLL ADAETLPPEN MLKWSMVVLT HADRHRPCLR FLGAPAAQNW
LELFPKAFPK SSLDILIRFP SDVTPEAAEK AWCTAIGAKG NYQTESSGHG TSVCPTAPGL
IMLRKVSKKA KESRSFSTLR RAAFCIAVTC RVTDEA
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