| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_4083 |
|---|
| Symbol | |
|---|
| ID | 5714665 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009958 |
|---|
| Strand | + |
|---|
| Start bp | 18468 |
|---|
| End bp | 19292 |
|---|
| Gene Length | 825 bp |
|---|
| Protein Length | 274 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 641276990 |
|---|
| Product | ATP-binding protein |
|---|
| Protein accession | YP_001542286 |
|---|
| Protein GI | 159046617 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2842] Uncharacterized ATPase, putative transposase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.309906 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.0721991 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCGCC AGACTCGCCG GACCGGTACT TTCCTCGTCA CCCGCGAACA TAAGCGGTTT
GTCGAATTCG CGAACGCTGT GCGCCGCAAC GCAACCATCG GCTTGTGTCA TGGTCGGGCG
GGCGTTGGCA AAACCTTGTC AGCCCGCCGC TATGCCAATT GGGACCTGAT CGAACCGCTG
ATAACGACAT GGGGTAGGCG TGAAGACTCG GACAAGAAAG TGTATGCAGC CTCGTCCCGC
GCCCGTACCT TGTTCTATAC ACCGCCGGTG GGCGGCAGTA TCTCGGCGCT GCGCAAGGAC
ATTCAACCAT TTATCATGCG ACTATGCGTT TGCATTGACA GCTACGGGAA CCCCAAGTGG
GCGGAGCGAC CTCTAACACC GCTTGGCCTG ATAGAGTTGG TAATCATTGA CGAAGCCGAA
CGCCTTACCA TGACCGGCCT GGAGTTCCTG CGCGACCAGT TCGATCGCAG TGACGCTGGG
CTGATCCTGA TCGGTATGCC CGGCATTGAA AAACGGATGT CGCAATACCC GCAACTCTAC
AGCCGAATAG GTTTTGTGCA TGAATACCCA CCGCTTTCGA AGGATGAGAT GCAATTCGTT
TTGCAGCGGC AATGGAGGAA ATGGGGCTTT GGCCAGGATG ATGCAGATTT CACCGACGAC
CGTGTTGCTG CTGCCATCAT CCGACTGACA GCTGGCAACT TCCGTCTTTT GCAACGCCTG
TTCATGCAGA TCGAACGCAT CGCCCGCATC AACGAAATGG CCGCAATCAC CGAAGATGTG
GTAGAGGCCG CCGCTCAGAC CCTCGTCATC GGAAACGCCA ATTAA
|
|---|
| Protein sequence | MSRQTRRTGT FLVTREHKRF VEFANAVRRN ATIGLCHGRA GVGKTLSARR YANWDLIEPL
ITTWGRREDS DKKVYAASSR ARTLFYTPPV GGSISALRKD IQPFIMRLCV CIDSYGNPKW
AERPLTPLGL IELVIIDEAE RLTMTGLEFL RDQFDRSDAG LILIGMPGIE KRMSQYPQLY
SRIGFVHEYP PLSKDEMQFV LQRQWRKWGF GQDDADFTDD RVAAAIIRLT AGNFRLLQRL
FMQIERIARI NEMAAITEDV VEAAAQTLVI GNAN
|
|---|
| |