| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_4082 |
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| Symbol | |
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| ID | 5714658 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dinoroseobacter shibae DFL 12 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009958 |
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| Strand | + |
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| Start bp | 16978 |
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| End bp | 18471 |
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| Gene Length | 1494 bp |
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| Protein Length | 497 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 641276989 |
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| Product | integrase catalytic region |
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| Protein accession | YP_001542285 |
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| Protein GI | 159046616 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.0484563 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGATAATCC GGCGTCCGGT CACCGATCCC CTTACGGACA GTCTGACTGC GCTGCCCGAA
GACCGACGCG CCGAGGCGTT GCGCCGGTTC AACATACTGC GCCAGCACCT GATCGACGAA
GTCCCCCTGA CGGAAGTTGC CCGTGTCAGT GGTATCCCAC TGCGCACGCT GCAAAGGTGG
ACGTCCCGAT ATCAGCGCTT TGGGCTTGCC GGACTTGCAA GAGCACCGCG ATCTGATGCC
GGGCAACGGC GGCTATCATC TGAACTGGTC GAGCTGATTG AAGGGCTGGC CTTACACAAA
CCCCGTCTCT CTACCGCCGC AATCCACCGG CGCATCATCC CGATTGTAAA ATCGCGTGAC
TGGCCTGTCC CTTCTTATGC CACGATACAT TCAATCGTGA ATAGTCTTGA TCCCGCGCTT
GTCACGCTCG CTCATGATGG CGCAGCCGCC TATCGTGACC GGTTCGAAAT GATTCATCGT
CATCGGGCCG AAAGGCCGAA TGCTGTCTGG CAGACAGACC ACACACAACT CGATCTAATC
ATCTTGGATA CCAATGGTGC GCCGGTGCGG CCGTGGCTTA CCATCGTGCT TGATGATCAT
TCCCGTGCAG TGGCTGGGTA CGCCGTCTTT GTCGGCGCAC CTTCTGCTAT CCAGACCGCT
CTTGCCCTGC GGCAAGCTAT CTGGCGAAAG GATACGCCTT CCTGGCCGAT TTGTGGCCTG
CCGGATGTTT TATACACCGA TCACGGCAGC GACTTCACCA GCAAGCACCT TGAGCAGGTC
GCAGCTGACC TGCGCATTGA GCTTGTGTTT TCCACGGTTG GCCGGCCACA GGGGCGTGGC
AAGATCGAGC GGTTTTTCGG TACCATCAAC ACTGAGCTGT TGCCTGAGTT ACCGGGGGCT
TTGTCGAACG GAAAACCAGC CTCCCCGCCA CGCCTGTCGC TCGGCGAGTT GGAGGTTGCC
GTAAAGACTT TCGTCACCGC AGTGTACAAC GCGCGCAAGC ATAGCGAAAT CGATGTGCCA
CCTAATGAGG CTTGGCGGGG TGACGGCTGG CTACCTCGTA TGCCGAACAG TCTGGAACAG
CTCGATCTGC TACTGGTAAT GGCCTTAAAA ACCCGGCAGG TCCGCCGTGA CGGCATTCGG
TTTCAGGGCT TGCTCTACAC CGATCCCACA CTTGCAGCCT ATGTCGGCAA AACGGTCAAC
ATCCGCTATG ACCCGCGCGA CATTACCGAA CTGCGCGTGT TCCACCGCGA CCGGTTTTTG
TGCCGCGCTG TCAGCGCCCA TCATGCGCAT CACACAATAT CACTCAAGGA TATCCAACAG
GCCCGCACCG CCAGGCGGAA GGCTTTGCGC AACGAGATCA CGGTAAAATC CAGACAGATC
ACCGAGTTTC TTCCCAAACC TGCGCCACCT CCAAGTCGTG AAAAGCAAAA TCCCGTATCG
CCTGACGCCC CGCGCCAAAA GCTGGTCCTG TATAAAACGG ACAAGACGCC ATGA
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| Protein sequence | MIIRRPVTDP LTDSLTALPE DRRAEALRRF NILRQHLIDE VPLTEVARVS GIPLRTLQRW
TSRYQRFGLA GLARAPRSDA GQRRLSSELV ELIEGLALHK PRLSTAAIHR RIIPIVKSRD
WPVPSYATIH SIVNSLDPAL VTLAHDGAAA YRDRFEMIHR HRAERPNAVW QTDHTQLDLI
ILDTNGAPVR PWLTIVLDDH SRAVAGYAVF VGAPSAIQTA LALRQAIWRK DTPSWPICGL
PDVLYTDHGS DFTSKHLEQV AADLRIELVF STVGRPQGRG KIERFFGTIN TELLPELPGA
LSNGKPASPP RLSLGELEVA VKTFVTAVYN ARKHSEIDVP PNEAWRGDGW LPRMPNSLEQ
LDLLLVMALK TRQVRRDGIR FQGLLYTDPT LAAYVGKTVN IRYDPRDITE LRVFHRDRFL
CRAVSAHHAH HTISLKDIQQ ARTARRKALR NEITVKSRQI TEFLPKPAPP PSREKQNPVS
PDAPRQKLVL YKTDKTP
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