| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dshi_4076 |
|---|
| Symbol | |
|---|
| ID | 5714621 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dinoroseobacter shibae DFL 12 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009958 |
|---|
| Strand | + |
|---|
| Start bp | 9370 |
|---|
| End bp | 10845 |
|---|
| Gene Length | 1476 bp |
|---|
| Protein Length | 491 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 641276983 |
|---|
| Product | capsule polysaccharide export protein |
|---|
| Protein accession | YP_001542279 |
|---|
| Protein GI | 159046610 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3524] Capsule polysaccharide export protein |
|---|
| TIGRFAM ID | [TIGR01010] polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.054878 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACACAGC CCAAACCCTC CCCCCAGGAC AGGGGCCCCT CCGCCCCCGA GCCCAAGCCC
GGTGCACCCG ACAGGGCCGC GCAGCAGGGC GCCGCGGCCT CGAAGGCGCC GGGGTCGGGC
GGTCAGAACA GACCCGGCGG TCCGGACGGG GCAAGCCCGA AGGCGCGGCC TCAACCCGTC
GTCCAGGCCT CGAAAGAGAC TGCTAAAAAG ACCGGAAAAG ACACTTTAAA GGACACGGGG
CACAAGACCG CCGCCCCGCA GCCCGCCCAG AAACCGGCCC AGAAACCCAC ACCGAAACCC
GCGCCTACAA AGGGCCAGGC CGAAGCGGCG CAGATCCGCA TCGCCCCACC GGTTCCCCCG
GCCCGCCGCC GTCCTCATCA CAAGTTGCTG ATGATCAGCT TCGCGATCAT GGTGGTCGTC
CCGATCCTGG TCTCGGCCTG GTATCTCTGG GCCCGGGCTC AGGACCAATA CGCGTCTTAC
GTGGGCTTTT CCGTGCGCAC CGAGGAGGTC GGCTCGGCCA TCGAGCTTCT GGGCGGGATC
ACCGAGCTGT CGGGCTCGTC GAGCTCGGAC ACCGATATTC TCTACAAGTT CCTGCAAAGC
CAGGAGCTGG TGGCGACGGT GGATGCCGCG CTCGACCTGC GCGGGATCTG GTCGAAGGCC
GACCCGGAGG TAGACCCGAT CTTCGCCTAT GATCCCCCCG GCACCATCGA GGATCTGCAG
GATCACTGGC TGCGCAAGGT GTCGATCTAT TACGACAGCG GCTCGGGACT CCTGGACCTG
CGGGTGCTGG CCTTCGATCC CGCCGACGCG CGCGCCATCG CCGAGATGAT CTTCGCCGAG
AGCAGCGCGC GCATCAACGC GCTCTCGGCG CTGGCCCGGG AAGACGCCAT CGCCTATGCC
CGCGACGAGC TCACCCAGGC CGAGACCCGT CTGCGCGACG CGCGCCTTGC GCTCAACGAG
TTCCGCAACC GCACACAGAT CGTCGATCCG ACCATCGACA CCCAGGGCCA GATGGGGCTG
GTCAACACGC TGCAGGCGCA GCTGGCCGAT GCCCTGATCG AGGTGGACCT GCTGCGCGAG
ACGACGCGCA CCGGCGACCC GCGGATCACG CAAGGCGAAC TGCGCATCGC GGTGATCGAA
CGCCGCATCG AGGAGGAACG CCGCAAGGTG GGCCTGGGCG GCGGGGTCTC GGGGGACCGG
TCGGTCTTTG CCGACCTGGT GGGCGAGTTC GAGCGGCTCT CGGTGGACCT GGAATTCGCC
CAGCAGAGCT ACGTGGCAGC GCTCGCCACC TTCGACGCGG CCCGCAACGA GGCCCGCCGC
CAGAGCCGGT ACCTGGCCGC CCATGTCCGC CCGACCCTGG CCGAGCGGGC CGAGTACCCC
CAACGGATCT ACCTGCTGGG CCTGATCGGG CTGTTTTCCT TCCTGGCCTG GACGATCACG
GCCCTCATCG CCTATTCCCT TCGAGACCGG CGCTGA
|
|---|
| Protein sequence | MTQPKPSPQD RGPSAPEPKP GAPDRAAQQG AAASKAPGSG GQNRPGGPDG ASPKARPQPV
VQASKETAKK TGKDTLKDTG HKTAAPQPAQ KPAQKPTPKP APTKGQAEAA QIRIAPPVPP
ARRRPHHKLL MISFAIMVVV PILVSAWYLW ARAQDQYASY VGFSVRTEEV GSAIELLGGI
TELSGSSSSD TDILYKFLQS QELVATVDAA LDLRGIWSKA DPEVDPIFAY DPPGTIEDLQ
DHWLRKVSIY YDSGSGLLDL RVLAFDPADA RAIAEMIFAE SSARINALSA LAREDAIAYA
RDELTQAETR LRDARLALNE FRNRTQIVDP TIDTQGQMGL VNTLQAQLAD ALIEVDLLRE
TTRTGDPRIT QGELRIAVIE RRIEEERRKV GLGGGVSGDR SVFADLVGEF ERLSVDLEFA
QQSYVAALAT FDAARNEARR QSRYLAAHVR PTLAERAEYP QRIYLLGLIG LFSFLAWTIT
ALIAYSLRDR R
|
|---|
| |